View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_49 (Length: 221)
Name: NF16054_high_49
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 41702804 - 41702614
Alignment:
| Q |
18 |
ctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttg |
117 |
Q |
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| T |
41702804 |
ctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttg |
41702705 |
T |
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| Q |
118 |
aaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtattat |
208 |
Q |
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| T |
41702704 |
aaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagtcttat |
41702614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 41469882 - 41470076
Alignment:
| Q |
18 |
ctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacat---------atttcttctctttttctaaactcaaactcagcat |
108 |
Q |
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| T |
41469882 |
ctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagcat |
41469981 |
T |
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| Q |
109 |
gcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgcaacttttgattctcttctctgagt |
203 |
Q |
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| T |
41469982 |
atacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgcaacttttgattctcctctctgagt |
41470076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 41509724 - 41509779
Alignment:
| Q |
113 |
ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa |
168 |
Q |
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| T |
41509724 |
ccttgcaagtttctccatttcaagctcctcttgaagctttagtctctccatatcaa |
41509779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 41519950 - 41520005
Alignment:
| Q |
113 |
ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa |
168 |
Q |
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| T |
41519950 |
ccttgcaagtttctccattttaagctcctcttgaagctttagtctctccatttcaa |
41520005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 41524535 - 41524585
Alignment:
| Q |
18 |
ctatttaccttaacctctttcaagagagcttcataattttcttgcactttc |
68 |
Q |
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| T |
41524535 |
ctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc |
41524585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 16638434 - 16638302
Alignment:
| Q |
36 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
135 |
Q |
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| T |
16638434 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
16638335 |
T |
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| Q |
136 |
gctgctctttaagctttagtctctccatttcaa |
168 |
Q |
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| T |
16638334 |
gctccccttgaagcttttgtctcggcatttcaa |
16638302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 17457204 - 17457336
Alignment:
| Q |
36 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
135 |
Q |
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| T |
17457204 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
17457303 |
T |
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| Q |
136 |
gctgctctttaagctttagtctctccatttcaa |
168 |
Q |
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||| | ||| ||||||| ||||| |||||||| |
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| T |
17457304 |
gctccccttgaagcttttgtctcggcatttcaa |
17457336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 17596010 - 17595878
Alignment:
| Q |
36 |
ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa |
135 |
Q |
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|||||||||||||||||| ||| || |||||| ||| ||| |||||||| ||||||| ||||||||| ||||||| |||| ||||||| | || |
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| T |
17596010 |
ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa |
17595911 |
T |
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| Q |
136 |
gctgctctttaagctttagtctctccatttcaa |
168 |
Q |
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||| | ||| ||||||| ||||| |||||||| |
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| T |
17595910 |
gctccccttgaagcttttgtctcggcatttcaa |
17595878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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