View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16054_high_5 (Length: 577)
Name: NF16054_high_5
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Complemental strand, 40260507 - 40259970
Alignment:
| Q |
19 |
gaagggtccctcaacaattttcttaccttctttctcaaactcgattggtacttgtcctcaannnnnnnacatttactaatcaattttgaagtagaaatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40260507 |
gaagggtccctcaacaattttcttaccttctttctcaaactcgattggtacttgtcctcaatttttttacatttactaatcaattttgaagtagaaatat |
40260408 |
T |
|
| Q |
119 |
attgttctactttctatcggataaaattatactgtgcttatcctgtataatttcaggcacaaaatgaagaaaatgaagatcagactttatttgatgtatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40260407 |
attgttctactttctatcggataaaattatactgtgcttatcccatataatttcaggcacaaaatgaagaaaatgaagatcagactttatttgatgtatc |
40260308 |
T |
|
| Q |
219 |
catacagtccctctgaattagtcataactaaaatatcgttaaggaggtttgttaatgtattaatataatactaacagcatattcttgacaaatattctag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40260307 |
catacagtccctctgaattagtcataactaaaatatcgttaaggaggtttgttaatgtattaatataatactaacagcatattcttgacaaatattctag |
40260208 |
T |
|
| Q |
319 |
agatatcttataatataagtgtaatattctacagatattctacaaaaggcttctagaaatttgtattaaacttaaataatggcaaaggttgatagaaccg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40260207 |
agatatcttataatataagtgtaatattctacagatattctacaaaaggcttctagaaatttgtattaaacttaaataatggcaaaggttgatagaaccg |
40260108 |
T |
|
| Q |
419 |
aaactggaagctgagcagtaaaggcaaatgatcagggaagaagcatttctttctgtctttcataaaaagcatggaaagttcccgatgtattttgctggct |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40260107 |
aaactggaagctgagcagtaaaggcaaatgatcagggaagaagcatttctttctgtctttcataaaaagcatggaaaattcccgatgtattttgctggct |
40260008 |
T |
|
| Q |
519 |
ttctttctcaaactcctttgccagttgattctccatgg |
556 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40260007 |
ttctttctcgaactcctttgccagttgattctccatgg |
40259970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 40260589 - 40260505
Alignment:
| Q |
410 |
atagaaccgaaactggaagctgagcagtaaaggcaaatgatcagggaagaagcatttctttctgtctttcataaaaagcatggaa |
494 |
Q |
| |
|
||||||| |||||||||||||||||| |||| | | ||||| ||||||| | || |||||| |||||||||||| || ||||| |
|
|
| T |
40260589 |
atagaactgaaactggaagctgagcaagaaagacgacggatcatggaagaaacgttgctttctttctttcataaaatgcttggaa |
40260505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University