View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_high_6 (Length: 550)
Name: NF16054_high_6
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 12 - 533
Target Start/End: Complemental strand, 2681756 - 2681235
Alignment:
| Q |
12 |
atgaatcttctaaggaatgtaagtgaaaataattcttcaattaaactactatgatgtgatatgatattatcttctactatgtagtaagcaccaagaattg |
111 |
Q |
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| T |
2681756 |
atgaatcttctaaggaatgtaagtgaaaataattcttcaattaaactactatgatgtgatatgatattatcttctactatgtagtaagcaccaagaattg |
2681657 |
T |
|
| Q |
112 |
aagaaataatatgttttcttgttgtaggcatggggacagtggagagaaggcaatgcattggaactcattgattcatcgattggaaattcatatacagaat |
211 |
Q |
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| T |
2681656 |
aagaaataatatgttttcttgttgtaggcatggggacagtggagagaaggcaatgcattggaactcattgattcatcgattggaaattcatatacagaat |
2681557 |
T |
|
| Q |
212 |
ctgaagttcttagatgcatacatgttggactcttatgtgtccaagaacgtgcagaagatagaccaacaatgccttcagtgctcttgatgctaggcagtga |
311 |
Q |
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| T |
2681556 |
ctgaagttcttagatgcatacatgttggactattatgtgtccaagaacgtgcagaagataggccaacaatgccttcagtgctcttgatgctaggcagtga |
2681457 |
T |
|
| Q |
312 |
aactgcactaatgccagaacctagaagtccaggattttcgcttggaaggtcaaggaatcctcaagagactgattcctcttcaagtaagcaagatgaaaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2681456 |
aactgcactaatgccagaacctagaagtccaggattttcgcttggaaggtcaaggaatcctcaagagactgattcctcttcaagtaagcaagatgaaaca |
2681357 |
T |
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| Q |
412 |
tggagtgtgaaccaagttacagtcacattgctagatgctaggtagggaaataagcataacatcatccaacatatttgtatagtccagaaacatgataaaa |
511 |
Q |
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| T |
2681356 |
tggagtgtgaaccaagttacagtcacattgctagatgctaggtagggaaataagcataacatcatccaacatatttgtatagtccagaaacatgataaaa |
2681257 |
T |
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| Q |
512 |
tgtttctgtaaagggtttggtg |
533 |
Q |
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| T |
2681256 |
tgtttctgtaaagggtttggtg |
2681235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 303 - 533
Target Start/End: Original strand, 3050071 - 3050310
Alignment:
| Q |
303 |
aggcagtgaaactgcactaatgccagaacctagaagtccaggattttcgcttggaaggtcaaggaatcctcaag-------agactgattcctcttcaag |
395 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| | ||||| | | ||||||||||||||| ||| |
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| T |
3050071 |
aggcagtgaaactgcactaatgccagaacttagaagtccagggttttcccttggaaggtcaaaggatccttaggccttaggagactgattcctctttaag |
3050170 |
T |
|
| Q |
396 |
taagcaa-gatgaaacatggagtgtgaaccaagttacagtcacattgctagatgctaggtagggaaataagcataacatcatccaacatatttgtatagt |
494 |
Q |
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| T |
3050171 |
aaagcaaagatgaaggatggagtgtgaaccaagtcacagtcacattgctagattataggtagggaaagaagcgtaacatcatccaacatatttgtatagt |
3050270 |
T |
|
| Q |
495 |
-ccagaaacatgataaaatgtttctgtaaagggtttggtg |
533 |
Q |
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| T |
3050271 |
cccagaaacatggaaaaatgtttctgtaaagggtttggtg |
3050310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 36366937 - 36367080
Alignment:
| Q |
157 |
gaaggcaatgcattggaactcattgattcatcgattggaaattcatatacagaatctgaagttcttagatgcatacatgttggactcttatgtgtccaag |
256 |
Q |
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||||| ||||| ||||| || ||||| || || |||| ||||||||| || | |||| ||| ||||||||||||| ||||| || ||||| || |||| |
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| T |
36366937 |
gaaggaaatgctttggagctgattgactcttctattgttaattcatattcaccagctgaggtttttagatgcatacaagttgggctattatgcgtacaag |
36367036 |
T |
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| Q |
257 |
aacgtgcagaagatagaccaacaatgccttcagtgctcttgatg |
300 |
Q |
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| T |
36367037 |
agcgagcagaagataggccaacaatgtcttcagtggtgttgatg |
36367080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 36367153 - 36367222
Alignment:
| Q |
379 |
actgattcctcttcaagtaagcaagatgaaacatggagtgtgaaccaagttacagtcacattgctagatg |
448 |
Q |
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|||||||| || |||||||| ||||||||| | || | ||||||||||||||| |||||| || |||||| |
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| T |
36367153 |
actgattcatcctcaagtaaacaagatgaatcttgcactgtgaaccaagttactgtcacaatggtagatg |
36367222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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