View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_1 (Length: 777)
Name: NF16054_low_1
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 383 - 769
Target Start/End: Original strand, 30299583 - 30299970
Alignment:
| Q |
383 |
tatatatatatcaaaaccaaaactaaattaagcagcgataagtttgtgggagaggatcaatgtttgatcccggcaaaacacactttttagaagaggcgaa |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299583 |
tatatatatatcaaaaccaaaactaaattaagcagcgataagtttgtgggagaggatcaatgtttgatcccggcaaaacacactttttagaagaggcgaa |
30299682 |
T |
|
| Q |
483 |
gagctttaagttgcaacctaaacagtcgaaaagagattagtctcatagtcaattcaaatgaccgacatttgtggaaattttacgtggagtcactaggatg |
582 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299683 |
gagctttaagttgcgacctaaacagtcgaaaagagattagtctcatagtcaattcaaatgaccgacatttgtggaaattttacgtggagtcactaggatg |
30299782 |
T |
|
| Q |
583 |
ctaaatgccagaattgtgatagtttctaaataaaaacctcaaaattaaattgaattt-gcatatagtaattatttttatttttgatgtgcatgttaacat |
681 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299783 |
ctaaatgccagaattgtgatagtttctaaatacaaacctcaaaattaaattgaatttagcatatagtaattatttttatttttgatgtgcatgttaacat |
30299882 |
T |
|
| Q |
682 |
taattaaaatatttcccttaaaataaattaatattgaaatatttggttacttaaatgaatgagtaaaatctaattattatatgtttat |
769 |
Q |
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| T |
30299883 |
taattaaaatatttcccttaaaataaattaatattgaaatatttggttacttaaatgaatgagtaaaatctaattaagatatgtttat |
30299970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 30299182 - 30299469
Alignment:
| Q |
10 |
gagatgaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtca |
109 |
Q |
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| T |
30299182 |
gagaagaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtca |
30299281 |
T |
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| Q |
110 |
tccaactgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactattttat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299282 |
tccaactgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactattttat |
30299381 |
T |
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| Q |
210 |
atacatgtctcttcaagtttgttttgcacaaactaataaataactttgattaataaataaattttaagcaagttttttatgcaacaat |
297 |
Q |
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| T |
30299382 |
atacatgtctcttcaagtttgttttgcacaaactaataaataactttgattaataaataaattttaagcaagttttttatgcaacaat |
30299469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 30291773 - 30291946
Alignment:
| Q |
25 |
aacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttag |
124 |
Q |
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| T |
30291773 |
aacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaa |
30291872 |
T |
|
| Q |
125 |
cgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
198 |
Q |
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| T |
30291873 |
agcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggta |
30291946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 30304407 - 30304580
Alignment:
| Q |
25 |
aacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttag |
124 |
Q |
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| T |
30304407 |
aacaagaagaagagagaagccaacaagtgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaa |
30304506 |
T |
|
| Q |
125 |
cgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
198 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
30304507 |
agcttcgtcggatctctctttgcttggatttggtatcaatgctgagaacaaccagaggagcttccttgctggta |
30304580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 30315313 - 30315493
Alignment:
| Q |
15 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
114 |
Q |
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| T |
30315313 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattcccgcaggtcatccaa |
30315409 |
T |
|
| Q |
115 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
198 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
30315410 |
ttgtcgtaaaggcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
30315493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 30286732 - 30286912
Alignment:
| Q |
15 |
gaagatgaacaacaagaagaagagagaagccaacaagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaa |
114 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30286732 |
gaagatgaacaacaacaagaa---agaagccaacaagtacaaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaa |
30286828 |
T |
|
| Q |
115 |
ctgtcgttagcgcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
198 |
Q |
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| T |
30286829 |
ttgtcgtaactgcttcttcggatctctctttgcttggatttggtatcaatgcggagaacaatcaaaggaacttccttgctggta |
30286912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 46810182 - 46810337
Alignment:
| Q |
49 |
aagtgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgct |
148 |
Q |
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||||||| ||||||| |||||| |||||||||| || || | |||||||||||||||| ||| | | | | ||||||||| ||||| ||| || |
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| T |
46810182 |
aagtgcagaggtacaacgctaggctgtctccaggcgacgttgttataattccggcaggtcacccagtagccataaatgcttcctcgaatctcaatttcct |
46810281 |
T |
|
| Q |
149 |
tggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactat |
204 |
Q |
| |
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||| ||||||||||||||||||||||| |||| ||||| |||||||||| ||||| |
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| T |
46810282 |
tggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatactat |
46810337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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