View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_10 (Length: 453)
Name: NF16054_low_10
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 7661597 - 7661372
Alignment:
| Q |
18 |
gacctgtattatgcttttaatctgctaggaccagctaacaaggtttacttctagaagttttgtctaaatttcactcaaaatttaattacaatatctacca |
117 |
Q |
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| T |
7661597 |
gacctgtattatgcttttaatctgctaggaccagctaacaaggtttacttctagaagttttgtctaaatttcactcaaaatttaattgcaatatctacca |
7661498 |
T |
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| Q |
118 |
atgatttgatagcatcaccactcgtgcaactctaaattctcaacattttttatttgtcttttagttagttaaaaacaattagctgtagaagagtacccct |
217 |
Q |
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| T |
7661497 |
atgatttgatagcatcaccactcgtgcaactctaaattctcaacattttttatttgtcttttagttagttaaaaacaattagctgtagaagagtacccct |
7661398 |
T |
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| Q |
218 |
tgcacccacaccatgcaagattccct |
243 |
Q |
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| T |
7661397 |
tgcacccacaccatgcaagattccct |
7661372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 272 - 453
Target Start/End: Complemental strand, 7661343 - 7661162
Alignment:
| Q |
272 |
ctatatactaattgctcaccaatgtcgtaaaaattgtatgaaaatctctcttgctcccttgtatggcaatgttattgattatttaaatgtttgaatattc |
371 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7661343 |
ctatataccaattgctcaccaatgtcgtaaaaattgtatgaaaatctctcttgctcccttgtatggcaatgctattgattatttaaatgtttgaatattc |
7661244 |
T |
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| Q |
372 |
tttttatgtgaaatgcacatgttgttcaagagtgaacaggaatatgtgctaattaattgctgactaattatggagtacttat |
453 |
Q |
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| T |
7661243 |
tttttatgtgaaatgcacatgttgttcaagagtgaacaggaatatgtgctaattaattgctgactaattatggagcacttat |
7661162 |
T |
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