View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_13 (Length: 393)

Name: NF16054_low_13
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_low_13
NF16054_low_13
[»] chr7 (4 HSPs)
chr7 (21-384)||(44002850-44003219)
chr7 (261-350)||(28105635-28105727)
chr7 (324-374)||(3799875-3799925)
chr7 (274-359)||(25061748-25061836)
[»] chr5 (2 HSPs)
chr5 (235-384)||(4177193-4177347)
chr5 (240-384)||(13288435-13288582)
[»] chr8 (1 HSPs)
chr8 (324-382)||(2546136-2546194)
[»] chr2 (1 HSPs)
chr2 (238-384)||(18482715-18482861)
[»] chr1 (2 HSPs)
chr1 (237-346)||(39080579-39080690)
chr1 (309-359)||(6333648-6333698)
[»] scaffold0606 (1 HSPs)
scaffold0606 (236-291)||(8591-8646)
[»] chr3 (1 HSPs)
chr3 (283-384)||(29843537-29843636)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 44003219 - 44002850
Alignment:
Q  21 tatctttctatatattttacctaaaattgatcaaacaactctg------ataaaagaatattgatcatgattccctaaaatttcgccatgaatttcttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44003219 tatctttctatatattttacctaaaattgatcaaacaactctcccattaataaaagaatattgatcatgattccctaaaatttcgccatgaatttcttta 44003120  T
Q  115 ctactactataaaatacaagattggttgtgtatgcataatgtggaatataatattttcctaaaatatttgacttgcaggagcactagtctagcatgccgc 214  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  44003119 ctactactataaaatacaagattggttgtgtatgcataacgtggaatataatattttcctaaaatatttgacttgcaagagcactagtctaccatgccgc 44003020  T
Q  215 acaccagacccgatcttagaggagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44003019 acaccagacccgatcttagaggagtgcaaacagctcaactaagttaggcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccat 44002920  T
Q  315 tcaaataacaaaaacatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctcactc 384  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  44002919 tcaaataacaaaaacatattttccttcttcttctttcttcggtacgcggttgggtttcttcttctcactc 44002850  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 28105635 - 28105727
Alignment:
Q  261 ggcctctaaaatgtatgggcctaaaaataatatagcctaatatccacaccccattcaaataa---caaaaacatatgttccttctttttcttt 350  Q
    ||||||||||||| | ||||||||||| |||||||||||||  | |||||||| ||||||||    ||||||| |||||||||||||||||||    
T  28105635 ggcctctaaaatgcacgggcctaaaaaaaatatagcctaattccaacaccccactcaaataaaataaaaaacacatgttccttctttttcttt 28105727  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 3799925 - 3799875
Alignment:
Q  324 aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttctt 374  Q
    ||||||||| ||| |||||||||||||||||  |||||| |||||||||||    
T  3799925 aaaaacataggtttcttctttttctttcttcattacgcgtttgggtttctt 3799875  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 25061748 - 25061836
Alignment:
Q  274 tatgggcctaaaaataatat--agcctaatatccacaccccattcaaataacaaaaaca-tatgttccttctttttctttcttcggtac 359  Q
    |||||||||||||| || ||  || ||||||||||| ||| | | |||||| ||||| | |||||| ||||||||||||||||||||||    
T  25061748 tatgggcctaaaaaaaaaattaagtctaatatccaccccctacttaaataaaaaaaaaaatatgttacttctttttctttcttcggtac 25061836  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 4177193 - 4177347
Alignment:
Q  235 ggagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataatata-------gcctaatatccacaccccattcaaataacaaaa 327  Q
    |||||||||||| |||||| |||| ||| ||| |||||| ||| ||||||||| ||||||       |||||||| | || ||| | |||||||| ||||    
T  4177193 ggagtgcaaacaactcaaccaagtcgggtctccaaaatgcatgagcctaaaaaaaatataaattatagcctaatacctac-ccctactcaaataa-aaaa 4177290  T
Q  328 acatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctcactc 384  Q
    ||| ||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||    
T  4177291 acacatgatccttctttttctttcttcagtacgcgtttgtgtttcttcctctcactc 4177347  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 13288435 - 13288582
Alignment:
Q  240 gcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataa----tatagcctaatatccacaccccattcaaataacaaaaacatatgt 335  Q
    |||| ||||||||| |||  || |||| ||||| ||||||||| |||||||    ||||| |||||||| || |||||||||||||| | ||| ||||||    
T  13288435 gcaagcagctcaaccaagccggacctccaaaatatatgggcctcaaaataaattttatagactaatatctac-ccccattcaaataaaataaatatatgt 13288533  T
Q  336 tccttctttttctttcttcggtacgcggttgggtttcttcatctcactc 384  Q
    || |||||||||||| |||  |||||  ||| |||||||| ||||||||    
T  13288534 tcattctttttctttattcaatacgcttttgagtttcttcttctcactc 13288582  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 2546194 - 2546136
Alignment:
Q  324 aaaaacatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctcac 382  Q
    ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||    
T  2546194 aaaaacatatgtttcttctttttctatcttcagtacgcgtttgggtttcttcttctcac 2546136  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 384
Target Start/End: Complemental strand, 18482861 - 18482715
Alignment:
Q  238 gtgcaaacagctcaactaagttgggcctctaaaatgtatgggccta-aaaataatatagcctaatatccacaccccattcaaataacaaaaacatatgtt 336  Q
    |||||||| ||||||   ||||||||||| |||||||||||||||| |||| |||||||||||||| |||| | | | | |||||  ||| | |||||||    
T  18482861 gtgcaaaccgctcaatcgagttgggcctccaaaatgtatgggcctaaaaaaaaatatagcctaatacccaccctcaactgaaata--aaagaaatatgtt 18482764  T
Q  337 ccttctt-tttctttcttcggtacgcggttgggtttcttcatctcactc 384  Q
    |||| || ||||||||||| ||||||  || | ||||||| ||||||||    
T  18482763 cctttttctttctttcttcagtacgcctttcgttttcttcttctcactc 18482715  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 39080690 - 39080579
Alignment:
Q  237 agtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaa--taatatagcctaatatccacaccccattcaaataacaaaaacatatg 334  Q
    |||||||||| |||| | |||| ||||||| ||||||  ||||| ||||||  || || || |||||| |||||||||| |||||||| || || |||||    
T  39080690 agtgcaaacaactcagccaagtcgggcctccaaaatgcttgggcttaaaaaaatattagagtctaatacccacaccccactcaaataaaaataaaatatg 39080591  T
Q  335 ttccttcttttt 346  Q
    |||||| |||||    
T  39080590 ttcctttttttt 39080579  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 6333698 - 6333648
Alignment:
Q  309 ccccattcaaataacaaaaacatatgttccttctttttctttcttcggtac 359  Q
    ||||||| |||||| ||||| ||||||| ||| ||||||||||||||||||    
T  6333698 ccccatttaaataaaaaaaatatatgttacttatttttctttcttcggtac 6333648  T

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Target: scaffold0606 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 8646 - 8591
Alignment:
Q  236 gagtgcaaacagctcaactaagttgggcctctaaaatgtatgggcctaaaaataat 291  Q
    |||||||||||||||||  || ||||||||| ||||  ||||||||||||||||||    
T  8646 gagtgcaaacagctcaagcaaattgggcctccaaaagttatgggcctaaaaataat 8591  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 29843636 - 29843537
Alignment:
Q  283 aaaaataat-atagcctaatatccacaccccattcaaataacaaaaacatatgttccttctttttctttcttcggtacgcggttgggtttcttcatctca 381  Q
    ||||||||| |||||| ||||||||| ||||| |||||||| |||||  |||||||||||| ||||||||||  || |  | |||||||||||| |||||    
T  29843636 aaaaataattatagcccaatatccac-ccccactcaaataaaaaaaa--tatgttccttctctttctttcttaagtgcatgtttgggtttcttcttctca 29843540  T

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