View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_16 (Length: 364)
Name: NF16054_low_16
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 50749522 - 50749196
Alignment:
| Q |
18 |
atggatataccg--atcattttaattttatcatattatttatagatatgttatcgtgctattaacttgatgttgtgagtttattcacatgtttaatttta |
115 |
Q |
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| T |
50749522 |
atggatataccgcgaccattttgattttatcatattatttatagatatgttatcgtgctattaa-------ttgtgagtttattcacatgtttaatttta |
50749430 |
T |
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| Q |
116 |
aatatttttacaatgtttatgtggttgcaataaagaaatcggagggagattgaacattgtttaacatttgaattacagtttgtggacgtcaaatttaatg |
215 |
Q |
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| T |
50749429 |
aatatttttacaatgtttacgtggttgcaataaagaaatcggagggagattgaacattgtttaacatttgaattacaacttgtggacgtcaaatttaatg |
50749330 |
T |
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| Q |
216 |
atgataaatttttatggcaaaaacaaacaaattcattacaccatgtgacacccatgtattcaggaattgtttggttctccaatgaaaacatgacacatag |
315 |
Q |
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| T |
50749329 |
atgataaatttttatggcaaaaacaaacaaatt--------catgtgacacccatgtattcaggaattgtttggttctccaatgaaaacatgacac---- |
50749242 |
T |
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| Q |
316 |
aagagaatggaaaagcagctaaatgctagtcaaatgattgggttggaac |
364 |
Q |
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| T |
50749241 |
---agaatggaaaagcagctaaatgctagtcaaatgattgggttggaac |
50749196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 45393277 - 45393305
Alignment:
| Q |
31 |
tcattttaattttatcatattatttatag |
59 |
Q |
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| T |
45393277 |
tcattttaattttatcatattatttatag |
45393305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 31802406 - 31802373
Alignment:
| Q |
30 |
atcattttaattttatcatattatttatagatat |
63 |
Q |
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| T |
31802406 |
atcactttaattttatcatattatttatagatat |
31802373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 5546499 - 5546527
Alignment:
| Q |
30 |
atcattttaattttatcatattatttata |
58 |
Q |
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| T |
5546499 |
atcattttaattttatcatattatttata |
5546527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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