View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_18 (Length: 358)
Name: NF16054_low_18
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 14782662 - 14782998
Alignment:
| Q |
6 |
gtgagatgaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaa |
105 |
Q |
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| T |
14782662 |
gtgagaagaataacacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaa |
14782761 |
T |
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| Q |
106 |
gtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggttaacatttt |
205 |
Q |
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| T |
14782762 |
gtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggttaacatttt |
14782861 |
T |
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| Q |
206 |
tggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattgaacccaa |
305 |
Q |
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| T |
14782862 |
cggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattgaacccaa |
14782961 |
T |
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| Q |
306 |
gttgagacccatttgcttgaacctttgtggatgaaat |
342 |
Q |
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| T |
14782962 |
gttgagacccatttgcttgaacctttgtggatgaaat |
14782998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 14774797 - 14774911
Alignment:
| Q |
18 |
acacaattgagatttgaaaaagtgattttttgtttcactatgatggctgagagaatgagattgaaaacaagctgtgaagatagcaaaagtgctgaagttg |
117 |
Q |
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| T |
14774797 |
acacagttgagatttgaaaaggtgattttttgcttcacaatgataacagaaagaacaagattgaaaactagctgtgaagataacaaaagggctgaggttg |
14774896 |
T |
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| Q |
118 |
aaacaggtagatatg |
132 |
Q |
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| T |
14774897 |
aaacaggtagatatg |
14774911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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