View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_19 (Length: 358)
Name: NF16054_low_19
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 10339554 - 10339220
Alignment:
| Q |
8 |
gaaacagttacggcaggagatccaggtctgcattttatggcnnnnnnnnnnnnnnnnnaggaaggtttacttgcagcaataggcaataaacaaactcaat |
107 |
Q |
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| T |
10339554 |
gaaacagttacggcaggagatccaggtccgcattttatggcttttcttatttctttttaggaaggtttacttgcagcaataggcaataaacaaactcaat |
10339455 |
T |
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| Q |
108 |
tgcataagcatttgatatcttgaccattgacctaccataccatttgtagttccaattgtttgtatattccaaatcatacaaccattttctttaatgagaa |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10339454 |
tgcataagcatttgatatcttgatcattgacctaccataccatttgtagttccaattgtttgtatattccaaatcatacaaccattttctttaatgagaa |
10339355 |
T |
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| Q |
208 |
gtgtctcctttataggaagcataccatgtactccaactcttcatgttcaaacaaagacaaagatctgcacatgatgtactaaacatttttcttcttcttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10339354 |
gtgtctcctttataggaagcataccatgtactccaactcttcatgttcaaacaaagacaaagatctgcacatgatgtactaaacattttttttcttcttc |
10339255 |
T |
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| Q |
308 |
ataatgcaaaaagagccacaacttaacgttcataa |
342 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10339254 |
ataatgcaaaaagagccacaacttaacgttcataa |
10339220 |
T |
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