View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_2 (Length: 730)

Name: NF16054_low_2
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_low_2
NF16054_low_2
[»] chr2 (13 HSPs)
chr2 (13-715)||(8379253-8379940)
chr2 (297-711)||(23783706-23784120)
chr2 (297-630)||(23768032-23768365)
chr2 (302-630)||(30424731-30425059)
chr2 (302-630)||(30430764-30431092)
chr2 (302-630)||(30437019-30437347)
chr2 (299-508)||(30394880-30395089)
chr2 (303-630)||(30483753-30484080)
chr2 (302-630)||(30468830-30469158)
chr2 (302-524)||(30384430-30384652)
chr2 (302-630)||(30475792-30476120)
chr2 (348-435)||(30403917-30404004)
chr2 (183-246)||(8192490-8192553)
[»] chr5 (6 HSPs)
chr5 (303-676)||(41627756-41628129)
chr5 (207-247)||(1827693-1827733)
chr5 (207-247)||(27498894-27498934)
chr5 (219-250)||(12647731-12647762)
chr5 (183-246)||(40330628-40330691)
chr5 (174-247)||(25343233-25343306)
[»] chr8 (3 HSPs)
chr8 (303-481)||(15852260-15852438)
chr8 (181-249)||(3794787-3794855)
chr8 (185-247)||(3403643-3403705)
[»] chr1 (5 HSPs)
chr1 (185-247)||(43770105-43770167)
chr1 (185-247)||(1138573-1138635)
chr1 (174-247)||(40802197-40802270)
chr1 (203-247)||(7946838-7946882)
chr1 (183-246)||(24216973-24217036)
[»] chr7 (3 HSPs)
chr7 (183-243)||(1469114-1469174)
chr7 (174-247)||(7262215-7262288)
chr7 (183-248)||(40332096-40332161)
[»] chr4 (2 HSPs)
chr4 (174-247)||(41621726-41621799)
chr4 (183-225)||(13017745-13017787)
[»] chr3 (4 HSPs)
chr3 (174-247)||(4252526-4252599)
chr3 (174-251)||(50731363-50731440)
chr3 (174-251)||(50781414-50781491)
chr3 (174-229)||(26535050-26535105)
[»] scaffold0160 (1 HSPs)
scaffold0160 (185-230)||(29283-29328)


Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 13 - 715
Target Start/End: Original strand, 8379253 - 8379940
Alignment:
Q  13 catagggagctgtcacaataagatatatgctatcaataagtgagtccaataaagtttatatatttttaatctgagcataccaatcccaccacacttttgt 112  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| |||          
T  8379253 catagggagctgtcacaaaaagatttatgctatcaataagtgagtccaataaagtttatatatttttaatctgagcggatcaatcccaccgcac------ 8379346  T
Q  113 gggggccccatttaaagttagagtatggacttgcccactaagattggcatcaggaagaatcaatcaagcatgagaccttgagatgaacagacttcaagat 212  Q
             | ||||||| |||| ||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  8379347 ---------acttaaagtcagagcatggactcgcccactgagattggcatcaggaggaatcaatcaaacctgagaccttgagatgaatagacttcaagat 8379437  T
Q  213 ttcaagccaaccactaggtcaacctcaaatgggttcaaaagatgcaatttttataggaaaaatacaagaagatacagctaatacattaaaatacttacaa 312  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8379438 ttcaagccaaccactaagtcaacctcaaatgggttcaaaagatgcaatttttaaaggaaaaatacaagaagatacagctaatacattaaaatacttacaa 8379537  T
Q  313 tcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaa 412  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379538 tcttaagtttatttagtccttcatagtctggttttttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaa 8379637  T
Q  413 caatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccata 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379638 caatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagactcattcccata 8379737  T
Q  513 ttcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttct 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379738 ttcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttcattgctttct 8379837  T
Q  613 ctcttttgttaattatatatctaagagaagaatctatatctttttcaatttcatgcatcctcctttgagttgctgtaggtataaacctacaagtaaaaat 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8379838 ctcttttgttaattatatatctaagagaagaatctatatctttttcaatttcatgcatcctcctttgagtagctgtaggtataaacctacaagtaaaaat 8379937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 297 - 711
Target Start/End: Original strand, 23783706 - 23784120
Alignment:
Q  297 attaaaatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaat 396  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||||| |  ||||||||||| | ||||||||||| ||| ||||||||||||||||    
T  23783706 attaaaatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttccttgcacgttcttgccaat 23783805  T
Q  397 cagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttc 496  Q
    ||||||||||||||||||| | ||| ||||||||||||| |  ||||||||  ||||||||||| |  | ||||||| |||||||||| ||||| |||||    
T  23783806 cagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatggaataacctgcattccccgactacttcttc 23783905  T
Q  497 aagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacct 596  Q
    |||||||| |||||||||||||  ||||||||| ||| ||||||||  |||||| |||||||| || |||||||| |||||||||||||| |||||||||    
T  23783906 aagactcaatcccatattcttgacgtttccatgttctttaatttctctgtggttcgactctaggaggagacctaataagtcattctcagtggcttcacct 23784005  T
Q  597 gccttcattgctttctctcttttgttaattatatatctaagagaagaatctatatctttttcaatttcatgcatcctcctttgagttgctgtaggtataa 696  Q
    ||||| |||||||| || || |||||||||||||   |||||| ||  ||||| | ||||||| ||||||  ||| | || |||   || ||||||| ||    
T  23784006 gccttaattgctttttccctcttgttaattatattcttaagagtagtttctatttgtttttcattttcatttatctttctatgatcagcggtaggtaaaa 23784105  T
Q  697 acctacaagtaaaaa 711  Q
    |||| ||||||||||    
T  23784106 acctgcaagtaaaaa 23784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 297 - 630
Target Start/End: Complemental strand, 23768365 - 23768032
Alignment:
Q  297 attaaaatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaat 396  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||| |  ||||||||||| | ||||||||||| ||  ||||||||||||||||    
T  23768365 attaaaatacttacaatcttaagtttatttagtccatcaaagtctggtttttcattgccaaatatctctaatacttccttccgggcacgttcttgccaat 23768266  T
Q  397 cagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttc 496  Q
    | |||| |||||||||||| | ||| ||||||||||||| |  ||||||||  ||||||||||| |  | ||||||| |||||||||| ||||| |||||    
T  23768265 ctgggtgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaatatggaataacatgcattccccgactacttcttc 23768166  T
Q  497 aagactcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacct 596  Q
    |||||||| |||||||||||||  ||||||||| ||| ||||||||| |||||| |||||||| || |||||||| |||||||||||||| |||||||||    
T  23768165 aagactcaatcccatattcttgaagtttccatgttctttaatttctttgtggttcgactctaggaggagacctaataagtcattctcagtggcttcacct 23768066  T
Q  597 gccttcattgctttctctcttttgttaattatat 630  Q
    ||||| ||||||||||| || |||||||||||||    
T  23768065 gcctttattgctttctccctcttgttaattatat 23768032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 30425059 - 30424731
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    ||||||||| |||||||| | | |||| || ||| |||| ||||| ||||||||||| | |||||||||||| ||||| |||||||||||||||||||||    
T  30425059 aatacttacgatcttaagatgacttagcccgtcaaagtcaggtttattgttgccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcaggg 30424960  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    |||||||||||||| | ||||||||||||||||| |   ||||| |  ||||| ||||| |||||||| | |||||||||| | | |||||| |||||||    
T  30424959 tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaagtagaagagcttgcattcctctattacatcatcaagac 30424860  T
Q  502 tcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgcctt 601  Q
    ||||||| | |||||| ||||| || || |||   ||||||| ||| |||||||||| ||| | |||||| ||||||| || ||| ||||||||||||||    
T  30424859 tcattccaacattcttattgttgccgtgttcttccatttctttgtgatttgactctaaaagtatacctaataagtcatccttagtggcttcacctgcctt 30424760  T
Q  602 cattgctttctctcttttgttaattatat 630  Q
     | |||| | ||||| |||||||| ||||    
T  30424759 tagtgctctttctctcttgttaatcatat 30424731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 30431092 - 30430764
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    ||||||||| |||||||| | | |||| || ||| | |||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||     
T  30431092 aatacttacgatcttaagatgacttagcccgtcaaattctggtttattgttgccaaatacttgtaatacttcttcccttgcacgttcttgccaatctggt 30430993  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    |||||||||||||| | ||||||||||||||||| |   ||||| |  ||||| ||||| |||||||| | |||||||||| | | |||||| |||||||    
T  30430992 tacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttgtcctgcaaagtagaagagcttgcattcctctattacatcatcaagac 30430893  T
Q  502 tcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgcctt 601  Q
    ||||||| | |||||| ||||| || || |||   |||||||  || |||||||||| ||| | |||||| ||||||| || |||||||| |||||| ||    
T  30430892 tcattccaacattcttattgttgccttgttcttccatttctttttgatttgactctaaaagtatacctaataagtcatccttagttgctttacctgcttt 30430793  T
Q  602 cattgctttctctcttttgttaattatat 630  Q
     | |||| | ||||| |||||||||||||    
T  30430792 tagtgctctttctctcttgttaattatat 30430764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 30437347 - 30437019
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    |||||||||||||||||| | | |||| || ||| | || ||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  30437347 aatacttacaatcttaagatgacttagcccatcaaaatcgggtttattgttgccaaatacttgtaatacttcctcccttgcacgtgcttgccaatcaggg 30437248  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    |||||||||||||| |  |||||||||||||||| |   ||||| |  |||   ||||| |||||||||| |||||||||| | | |||||| |||||||    
T  30437247 tacctactcaacaacactattgtccaaacaagcaaaacagaagttgtctctgcacctgcaaagtagaatagcttgcattcctctattacatcgtcaagac 30437148  T
Q  502 tcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgcctt 601  Q
    ||||||| | |||||| |||||  |||| |||   ||||||| ||| |||||||||| ||| | ||||||||| |||| ||  ||||||||||||||| |    
T  30437147 tcattccaacattcttattgttgtcatgttcttccatttctttgtgatttgactctaaaagtatacctaacaaatcatcctttgttgcttcacctgccat 30437048  T
Q  602 cattgctttctctcttttgttaattatat 630  Q
     | |||| |||||||  ||||||| ||||    
T  30437047 tagtgctctctctctcgtgttaatcatat 30437019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 299 - 508
Target Start/End: Complemental strand, 30395089 - 30394880
Alignment:
Q  299 taaaatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatca 398  Q
    |||| ||||||||||||| || |||||||| || ||| | |||||||| ||||||||||| |  ||||| ||||||||||||||||||  ||||||||||    
T  30395089 taaattacttacaatctttaggttatttagcccatcaaaatctggttttttgttgccaaagacatgtaacacttcctccctagcacgtgtttgccaatca 30394990  T
Q  399 gggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaa 498  Q
    ||||||||||||||||||||||||||||||||||||| |   ||||||| |||||||||||| || | ||| |||||||||||| | |||||||  ||||    
T  30394989 gggtacctactcaacaatatcattgtccaaacaagcaaaaccgaagtagtttcttgccctgcaaaatggaacaacttgcattcctcgactacatgatcaa 30394890  T
Q  499 gactcattcc 508  Q
    ||||||||||    
T  30394889 gactcattcc 30394880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 303 - 630
Target Start/End: Complemental strand, 30484080 - 30483753
Alignment:
Q  303 atacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggt 402  Q
    ||||||||||||||||| |  |||||||||||| | |||||||  ||||||||||| | |||||  |||||||| || |||||| ||||||||| |||||    
T  30484080 atacttacaatcttaagatggtttagtccttcaaaatctggttgtttgttgccaaaaacttgtagcacttcctctcttgcacgtgcttgccaattagggt 30483981  T
Q  403 acctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagact 502  Q
     ||||||||| ||||  |||||||||||||||| |  |||||| | ||||| |||||| | |||||||| ||||||||||   | |||||| |||||| |    
T  30483980 gcctactcaataatacaattgtccaaacaagcaaaactgaagtggtttcttcccctgcaaggtagaatagcttgcattccttgattacatcatcaagatt 30483881  T
Q  503 cattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttc 602  Q
    |||||| | |||||| |||||    | |||| ||||||| | ||| |||||||| ||||||| |||||| |||||||||| ||| ||||||||||||||     
T  30483880 cattccaacattcttattgttgttgttatctttaatttccttgtgatttgactcaagaagaatacctaataagtcattcttagtggcttcacctgccttt 30483781  T
Q  603 attgctttctctcttttgttaattatat 630  Q
    ||| || | ||||| |||||||| ||||    
T  30483780 atttctctttctctcttgttaataatat 30483753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 30469158 - 30468830
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    |||||||||||||||||| | | |||| || ||| | || ||||| ||||||||||| |  ||||||||||| ||||| |||||  |||||||||| |||    
T  30469158 aatacttacaatcttaagatgacttagcccgtcaaaatcaggtttattgttgccaaagacctgtaatacttcttcccttgcacgcgcttgccaatcgggg 30469059  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    ||||||||||| || | ||||||||||||||||| |   ||||| |  ||||| ||||| |||||||||| |||||||||| | |  ||||| |||||||    
T  30469058 tacctactcaataacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaagtagaatagcttgcattcctctatcacatcatcaagac 30468959  T
Q  502 tcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgcctt 601  Q
    ||||||| | || ||| ||||| ||||| |||   ||||||| ||| |||||||||| ||| | ||||||||| |||| || ||||||||||||||||||    
T  30468958 tcattccgacatccttattgttgccatgttcttccatttctttgtgatttgactctaaaagtatacctaacaaatcatccttagttgcttcacctgcctt 30468859  T
Q  602 cattgctttctctcttttgttaattatat 630  Q
     | |||| | ||||| |||||||| ||||    
T  30468858 tagtgctctttctctgttgttaatcatat 30468830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 302 - 524
Target Start/End: Complemental strand, 30384652 - 30384430
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    ||||||||| ||||| || |||||||| || ||| | ||||||||  |||||||||| |  ||||| ||||||||||| |||||   |||||||||||||    
T  30384652 aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctcccttgcacgggtttgccaatcaggg 30384553  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    ||||||||||| |||||||||||||||||||||| |   |||||||  ||||| ||||| |||| ||| |||||||||||| | |||||||| |||||||    
T  30384552 tacctactcaataatatcattgtccaaacaagcaaaaccgaagtagtctcttgacctgcaaagtggaacaacttgcattcctcgactacatcatcaagac 30384453  T
Q  502 tcattcccatattcttgttgttt 524  Q
    ||||||||| || ||||||||||    
T  30384452 tcattcccacatccttgttgttt 30384430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 30476120 - 30475792
Alignment:
Q  302 aatacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg 401  Q
    ||||||||||||||||||||  |||||||| ||| | |||||||| || ||||| || | ||| |||||||||||||| |||||  |||||||||||||     
T  30476120 aatacttacaatcttaagttggtttagtccatcaaaatctggttttttattgccgaagacttgcaatacttcctcccttgcacgagcttgccaatcagga 30476021  T
Q  402 tacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagac 501  Q
    |||||||||||||| ||||||| ||||||||||| |   ||||| |  ||||||||||| |||||||||| |||||||||  | | |||||| |||||||    
T  30476020 tacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaaagtagaatagcttgcattcttctattacatcgtcaagac 30475921  T
Q  502 tcattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgcctt 601  Q
    ||||||| | || ||| |||||  | || |||   ||||||| ||| ||  |||| | ||| | |||||| || |||| || |||||||||||| |||||    
T  30475920 tcattccgacatccttattgttgtcgtgttcttccatttctttgtgattcaactccaaaagtatacctaataaatcatccttagttgcttcacccgcctt 30475821  T
Q  602 cattgctttctctcttttgttaattatat 630  Q
     | |||  ||||||| |||||||| ||||    
T  30475820 tagtgcgatctctctcttgttaatcatat 30475792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 348 - 435
Target Start/End: Complemental strand, 30404004 - 30403917
Alignment:
Q  348 ttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagca 435  Q
    |||| |||||| | ||| || |||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  30404004 ttgtcgccaaaaacttgcaaaacttcctctctagctcgtgcttgccaatcaggatatctactcaacaatatcattgtccaaacaagca 30403917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 8192490 - 8192553
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggt 246  Q
    ||||||||||||| || || ||| ||||||  |||||||||||||||| ||||| |||||||||    
T  8192490 tgagaccttgagaggagcacactccaagatcccaagccaaccactaggccaaccccaaatgggt 8192553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 303 - 676
Target Start/End: Original strand, 41627756 - 41628129
Alignment:
Q  303 atacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggt 402  Q
    |||||||||||||| |  |||||||| || ||| | |  ||||| ||||||||||| |||||||||||||||||||| || | | ||||||| |||||||    
T  41627756 atacttacaatcttcaagttatttagcccatcaaaattaggttttttgttgccaaagatttgtaatacttcctcccttgcccttgcttgccactcagggt 41627855  T
Q  403 acctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattcccccactacatcttcaagact 502  Q
    |||||||||| |||| ||||||||||||||| | |||||||||||  ||||||||||| |||||||| ||||||||||||   | ||||||||||| | |    
T  41627856 acctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaagtagaacaacttgcattcctgaattacatcttcaatatt 41627955  T
Q  503 cattcccatattcttgttgtttccatgatctctaatttcttggtggtttgactctagaagaagacctaacaagtcattctcagttgcttcacctgccttc 602  Q
    |||||||| ||||  |||||||||||| ||| ||||||| | |||||||| ||||| ||||| |||||| || ||||||| | || || ||||| ||||     
T  41627956 cattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataagaatacctaataaatcattcttattttctccaccttccttt 41628055  T
Q  603 attgctttctctcttttgttaattatatatctaagagaagaatctatatctttttcaatttcatgcatcctcct 676  Q
    | |  |||| | |||||||| || ||||   |||| ||||| | |||||||||  |||||||||  ||||||||    
T  41628056 aatattttcacccttttgttgatcatatccttaagtgaagattttatatctttcccaatttcattaatcctcct 41628129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 1827693 - 1827733
Alignment:
Q  207 caagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  1827693 caagatctcaagccaaccactaggtcaaccccaaatgggtt 1827733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 27498894 - 27498934
Alignment:
Q  207 caagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  27498894 caagattccaagccaaccactaggtcaaccccaaatgggtt 27498934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 12647762 - 12647731
Alignment:
Q  219 ccaaccactaggtcaacctcaaatgggttcaa 250  Q
    ||||||||||||||||||||||||||||||||    
T  12647762 ccaaccactaggtcaacctcaaatgggttcaa 12647731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 40330691 - 40330628
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggt 246  Q
    ||||||||||||| || || ||| |||||| |||||| |||||||| | |||||||||||||||    
T  40330691 tgagaccttgagaggagcaaactccaagatctcaagctaaccactaagccaacctcaaatgggt 40330628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 25343306 - 25343233
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| | ||||||||||| | || || | | |||||||||||| ||||||||||| ||||| ||||||||||    
T  25343306 aatcaaacttgagaccttgaaaagagcacaatccaagatttcaagtcaaccactaggccaaccccaaatgggtt 25343233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 303 - 481
Target Start/End: Original strand, 15852260 - 15852438
Alignment:
Q  303 atacttacaatcttaagtttatttagtccttcatagtctggtttgttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcagggt 402  Q
    |||| |||||| ||||||| | ||||||||||  ||| ||| || | ||| ||||| | ||| || ||||||| ||| |||||||||||||| ||||| |    
T  15852260 atacgtacaattttaagttgacttagtccttcgaagtttggattttggttcccaaaaacttgcaaaacttcctgccttgcacgttcttgccattcaggat 15852359  T
Q  403 acctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaagtagaataacttgcattc 481  Q
    |||| |  || || | |||||||||||| |||| | ||||||| |  ||||||||||||||||| || || ||||||||    
T  15852360 acctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgccaagtaaaacaatttgcattc 15852438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 3794855 - 3794787
Alignment:
Q  181 catgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggttca 249  Q
    ||||||||||||||| || || ||||||||||   |||||||||| |||||||||| ||||||| ||||    
T  3794855 catgagaccttgagaggagcaaacttcaagatcctaagccaaccattaggtcaaccacaaatggattca 3794787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 3403643 - 3403705
Alignment:
Q  185 agaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||||||||||| || ||| |||||| ||| ||||||| | ||| ||||||||||||||||    
T  3403643 agaccttgagatgagcaaactccaagatctcaggccaaccccaaggccaacctcaaatgggtt 3403705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 43770105 - 43770167
Alignment:
Q  185 agaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||    
T  43770105 agactttgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 43770167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 1138635 - 1138573
Alignment:
Q  185 agaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    ||||||||||| || || ||| |||||| ||||||||||||||||||||||| ||||||||||    
T  1138635 agaccttgagaggagcacactccaagatctcaagccaaccactaggtcaaccccaaatgggtt 1138573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 40802197 - 40802270
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| |||||||||||||||||| || ||| ||| || ||||||||||||| | | ||||| ||||||||||    
T  40802197 aatcaaacatgagaccttgagatgagcaaactccaatatctcaagccaaccacaaagccaaccccaaatgggtt 40802270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 7946882 - 7946838
Alignment:
Q  203 acttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||    
T  7946882 acttcaagatctcaagccaaccactaggtcgaccccaaatgggtt 7946838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 24217036 - 24216973
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggt 246  Q
    ||||||||||||| || || ||| ||||||  |||| ||||||||||||||||| |||||||||    
T  24217036 tgagaccttgagaggagcacactccaagatcccaagtcaaccactaggtcaaccccaaatgggt 24216973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 1469174 - 1469114
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatg 243  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||| ||||||    
T  1469174 tgagaccttgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 7262288 - 7262215
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| | ||||||||||||| || || ||| ||||||  |||| ||||||||| ||||||||||||| ||||    
T  7262288 aatcaaacttgagaccttgagaggatcacactacaagatcacaagtcaaccactaagtcaacctcaaataggtt 7262215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 40332161 - 40332096
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggttc 248  Q
    ||||||||| ||| || || ||| |||||||||||||||||||||||  ||||  |||||||||||    
T  40332161 tgagacctttagaggagcaaactccaagatttcaagccaaccactagaccaactccaaatgggttc 40332096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 41621726 - 41621799
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| ||||||||||||||| || || ||| |||||| |||||||||||| |||| ||||| ||||||||||    
T  41621726 aatcaaacatgagaccttgagaggagcaaactccaagatctcaagccaaccattaggccaaccccaaatgggtt 41621799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 13017787 - 13017745
Alignment:
Q  183 tgagaccttgagatgaacagacttcaagatttcaagccaacca 225  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||    
T  13017787 tgagaccttgagaggaacacacttcaagattccaagccaacca 13017745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4252526 - 4252599
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggtt 247  Q
    |||||| | ||||||||||||| || || ||| |||||| ||||||||||||||||| ||||| ||||||||||    
T  4252526 aatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccactaggccaaccccaaatgggtt 4252599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 50731363 - 50731440
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggttcaaa 251  Q
    |||||| | ||||||||||||| || || |||||||||| ||||| ||||||||||||| ||  ||||||| ||||||    
T  50731363 aatcaaacttgagaccttgagaggagcacacttcaagatctcaagtcaaccactaggtcgacaccaaatggattcaaa 50731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 50781491 - 50781414
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactaggtcaacctcaaatgggttcaaa 251  Q
    |||||| | ||||||||||||| || || |||||||||| ||||| ||||||||||||| ||  ||||||| ||||||    
T  50781491 aatcaaacttgagaccttgagaggagcacacttcaagatctcaagtcaaccactaggtcgacaccaaatggattcaaa 50781414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 26535105 - 26535050
Alignment:
Q  174 aatcaagcatgagaccttgagatgaacagacttcaagatttcaagccaaccactag 229  Q
    |||||| ||||| ||||||||||||||| ||||||| || ||||| ||||||||||    
T  26535105 aatcaaacatgaaaccttgagatgaacacacttcaaaatctcaagtcaaccactag 26535050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 29283 - 29328
Alignment:
Q  185 agaccttgagatgaacagacttcaagatttcaagccaaccactagg 230  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  29283 agaccttgagaggaacacacttcaagattccaagccaaccactagg 29328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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