View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_20 (Length: 349)

Name: NF16054_low_20

Description: NF16054

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16054_low_20

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 140; E-Value: 3e-73

Query Start/End: Original strand, 183 - 330

Target Start/End: Original strand, 33903154 - 33903301

Alignment:

Q	183	aacgacaccaagagcaataacaataaaagcaacgctgttttgaaagttttcatgtatgatctacctcccgagtttcatttcgggttattagattggaaag	282	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33903154	aacgacaccaagagcaataacaataaaagcaacgctgttttgaaagttttcatgtatgatttacctcccgagtttcatttcgggttattagattggaaag	33903253	T

Q	283	gcgatgaaaaggcgaaaaacgtttggcctgatatgaaaaccaagatac	330	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33903254	gcgatgaaaagacgaaaaacgtttggcctgatatgaaaaccaagatac	33903301	T

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Target: chr7; HSP #2

Raw Score: 69; E-Value: 6e-31

Query Start/End: Original strand, 46 - 118

Target Start/End: Original strand, 33903017 - 33903089

Alignment:

Q	46	acgacggttcatatttggtaacatctcaatcacaaaactctgaatcctccttcagcaatagagcaatccttgt	118	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33903017	acgacggttcagatttggtaacatctcaatcacaaaactctgaatcctccttcagcaatagagcaatccttgt	33903089	T

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