View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16054_low_22 (Length: 344)
Name: NF16054_low_22
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 33988730 - 33989042
Alignment:
| Q |
18 |
acattgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988730 |
acattgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
33988829 |
T |
|
| Q |
118 |
ctaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttatgaacttgaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988830 |
ctaagcaatgattcagcttcagcttctgccattacaaattctcctactctttgcagaaaaagccatgtttataacaacaatacaagttatgaacttgaag |
33988929 |
T |
|
| Q |
218 |
aagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatcattgcttagctttcagcatagttggatggtttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33988930 |
aagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatcattgcttagctttcagcatagttggatggtttc |
33989029 |
T |
|
| Q |
318 |
caatgagaataat |
330 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33989030 |
caatgagaataat |
33989042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 6835087 - 6834927
Alignment:
| Q |
21 |
ttgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcact-----aatg |
115 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
6835087 |
ttgtgtttttgatgagactgctatggatattaactcagtaatgtctcaaaaaaaatctatgattgaagaagaagatggtccacaaagcactaatgtaatg |
6834988 |
T |
|
| Q |
116 |
gactaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaa |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6834987 |
gactaagcaatgattcagcttcagcttctgccatta-aaattctcctactctatgcagaaaa |
6834927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 6834922 - 6834845
Alignment:
| Q |
208 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6834922 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgaatattacaacaacctcatgcaaggtagtgaatca |
6834845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 7275347 - 7275083
Alignment:
| Q |
21 |
ttgtgtttttgatgag---actactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
117 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7275347 |
ttgtgtttttgatgagtagactgctatggatattaactcagtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
7275248 |
T |
|
| Q |
118 |
ctaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttatgaacttgaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7275247 |
ctaagcaatgattcagcttcagcttctgcaattacaaattctcctactctatgcagaaaagggcatgtttataacaac---acaagttatgaacttgaag |
7275151 |
T |
|
| Q |
218 |
aagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
285 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
7275150 |
aagagtctttgattaatttcaaacgcaatgatgaatattacaagaacctcatgcaaggtagtgaatca |
7275083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 33129035 - 33128771
Alignment:
| Q |
21 |
ttgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatggacta |
120 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33129035 |
ttgtgtttttgaggagactactatggatattaactcaacagtgtctcataaaaaatatatgattgaagaagaag---gttcacaaagcactaatggacta |
33128939 |
T |
|
| Q |
121 |
agcaatgattcagcttcagcttc------tgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttatgaacttg |
214 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| | |||||||||| ||||| ||||||||||||||| |
|
|
| T |
33128938 |
agcaatgattcagcttcagcttcagcttctgccattacaaactcacctactctatgcagaaaagggcatgtttatagcaaca---caagttatgaacttg |
33128842 |
T |
|
| Q |
215 |
aagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
285 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33128841 |
aagaagagtttttgattaatttcaaaggcaatgatggatattacaacaacctcatgcaaggtagtgaatca |
33128771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University