View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_24 (Length: 335)

Name: NF16054_low_24
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_low_24
NF16054_low_24
[»] chr6 (14 HSPs)
chr6 (1-156)||(21151077-21151228)
chr6 (44-147)||(21182192-21182292)
chr6 (53-147)||(21315048-21315143)
chr6 (197-256)||(21150969-21151028)
chr6 (46-153)||(21267478-21267586)
chr6 (256-317)||(5462669-5462730)
chr6 (276-315)||(10031573-10031612)
chr6 (286-315)||(6751899-6751928)
chr6 (286-315)||(19369830-19369859)
chr6 (286-315)||(29959188-29959217)
chr6 (236-280)||(7625071-7625115)
chr6 (287-315)||(9024193-9024221)
chr6 (287-315)||(10157998-10158026)
chr6 (124-156)||(21303655-21303687)
[»] chr7 (9 HSPs)
chr7 (42-156)||(11843796-11843906)
chr7 (249-317)||(8160392-8160460)
chr7 (276-315)||(35238201-35238240)
chr7 (276-315)||(38134423-38134462)
chr7 (286-315)||(2143870-2143899)
chr7 (286-315)||(2144556-2144585)
chr7 (286-315)||(5937438-5937467)
chr7 (276-317)||(23165403-23165444)
chr7 (287-315)||(44172907-44172935)
[»] scaffold0016 (2 HSPs)
scaffold0016 (42-155)||(71945-72055)
scaffold0016 (46-79)||(61683-61716)
[»] scaffold0272 (1 HSPs)
scaffold0272 (42-155)||(11345-11455)
[»] chr4 (12 HSPs)
chr4 (276-315)||(37496707-37496746)
chr4 (267-315)||(18513258-18513306)
chr4 (249-315)||(13307853-13307919)
chr4 (287-317)||(26276024-26276054)
chr4 (227-317)||(37203218-37203308)
chr4 (279-315)||(5176990-5177026)
chr4 (287-315)||(5654608-5654636)
chr4 (287-315)||(10546162-10546190)
chr4 (286-314)||(28663505-28663533)
chr4 (287-315)||(34589723-34589751)
chr4 (273-313)||(35480154-35480194)
chr4 (271-315)||(44362664-44362708)
[»] scaffold0076 (1 HSPs)
scaffold0076 (64-127)||(18265-18325)
[»] chr5 (8 HSPs)
chr5 (273-315)||(11596472-11596514)
chr5 (287-318)||(41558668-41558699)
chr5 (233-315)||(2577197-2577279)
chr5 (273-315)||(26205777-26205819)
chr5 (276-313)||(28296331-28296368)
chr5 (286-315)||(30080518-30080547)
chr5 (276-317)||(38749578-38749619)
chr5 (287-315)||(43208291-43208319)
[»] chr2 (3 HSPs)
chr2 (276-316)||(40681985-40682025)
chr2 (276-315)||(18570975-18571014)
chr2 (286-315)||(43586022-43586051)
[»] chr8 (9 HSPs)
chr8 (280-315)||(1639497-1639532)
chr8 (276-315)||(31548310-31548349)
chr8 (287-317)||(34201061-34201091)
chr8 (281-314)||(1591307-1591340)
chr8 (286-315)||(31119100-31119129)
chr8 (286-315)||(42874535-42874564)
chr8 (287-315)||(10441217-10441245)
chr8 (281-317)||(18964185-18964221)
chr8 (287-315)||(29198496-29198524)
[»] chr1 (7 HSPs)
chr1 (287-317)||(40747788-40747818)
chr1 (249-315)||(42004964-42005030)
chr1 (286-315)||(18946051-18946080)
chr1 (287-315)||(3921681-3921709)
chr1 (287-315)||(11571599-11571627)
chr1 (287-315)||(14332422-14332450)
chr1 (263-315)||(29230055-29230107)
[»] chr3 (2 HSPs)
chr3 (279-315)||(24399660-24399696)
chr3 (287-315)||(40017386-40017414)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21151228 - 21151077
Alignment:
Q  1 tactatagactaactccaaaatcctgttaaatctatatgtgagttcatattatagcattctccattgataagcactcaatatatatcttgtggattagtt 100  Q
    ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||||| |||||||     ||| || |||||||    
T  21151228 tactatagactaactccaaaatcctgttaaatcaataaattagttcatattatagcattctccattgataagccctcaataa----cttttgaattagtt 21151133  T
Q  101 ttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatgc 156  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21151132 ttcggttcactaaaccaaacacaaatataggaactaaagaataagtacaaacatgc 21151077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 21182292 - 21182192
Alignment:
Q  44 ttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaata 143  Q
    |||||||| |||| |||||||||||||| |||||||||   || |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  21182292 ttcatattctagctttctccattgataatcactcaata---attttgtggattaattttcgattcacaaaaccaaacacaaacataggaactaaagaata 21182196  T
Q  144 aata 147  Q
    ||||    
T  21182195 aata 21182192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 21315143 - 21315048
Alignment:
Q  53 tagcattctcc--attgataagcactcaatatatatcttgtggattagtttt-cgattcactaaa-ccaaacacaaatataggaactaaagaataaata 147  Q
    |||||||||||  ||||||||||||||||||   ||||||||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||||||    
T  21315143 tagcattctcctcattgataagcactcaata---atcttgtggattaatttttctattcactaaaaccaaacacaaatattggaactaaagaataaata 21315048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 21151028 - 21150969
Alignment:
Q  197 aatgagattacaagtttgctaacatacatgtaaccaatgaagcaaggacatagacacgga 256  Q
    |||||||||||||||  |||||||||||||||||  ||||||||| ||||||||||||||    
T  21151028 aatgagattacaagtccgctaacatacatgtaacatatgaagcaaagacatagacacgga 21150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 21267586 - 21267478
Alignment:
Q  46 catattatagcattctccattgataagcactcaatatata-tcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataa 144  Q
    |||||| ||| |||||| ||||||||||| ||| |  ||| |||| ||||| | ||||||||| | |||||||||||||||||||||||| | ||||| |    
T  21267586 catattctaggattctctattgataagcagtcactcaataatcttttggatcaattttcgatttagtaaaccaaacacaaatataggaaccatagaatta 21267487  T
Q  145 atacaaaca 153  Q
     ||||||||    
T  21267486 ttacaaaca 21267478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 5462669 - 5462730
Alignment:
Q  256 acatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaatta 317  Q
    |||||| |||||||||||| |||| ||||  ||||||||||| |||||||||| ||||||||    
T  5462669 acatcggacacgacactgacaccgttaataatttgagaaaatcacataattcattgtaatta 5462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 10031573 - 10031612
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  10031573 accgataaaattttgagaaaatgacataattcaatgtaat 10031612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 6751928 - 6751899
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  6751928 ttttgagaaaatgacataattcaatgtaat 6751899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 19369830 - 19369859
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  19369830 ttttgagaaaatgacataattcaatgtaat 19369859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 29959188 - 29959217
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  29959188 ttttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 7625071 - 7625115
Alignment:
Q  236 aagcaaggacatagacacggacatcgaacacgacactgataccga 280  Q
    ||||| |||||||||||||||||||| ||||||||| || |||||    
T  7625071 aagcacggacatagacacggacatcggacacgacacagacaccga 7625115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 9024221 - 9024193
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  9024221 tttgagaaaatgacataattcaatgtaat 9024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 10157998 - 10158026
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaat 10158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 21303687 - 21303655
Alignment:
Q  124 aatataggaactaaagaataaatacaaacatgc 156  Q
    |||| ||||||||||||||||||||||||||||    
T  21303687 aataaaggaactaaagaataaatacaaacatgc 21303655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 11843906 - 11843796
Alignment:
Q  42 agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa 141  Q
    |||||||||||||||| |||||||||||||||||||||||   |||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  11843906 agttcatattatagcactctccattgataagcactcaata---atcttgtgcattaatttttgattcactaaaccaaacac-aatataggaactaaagaa 11843811  T
Q  142 taaatacaaacatgc 156  Q
    |||||||||||||||    
T  11843810 taaatacaaacatgc 11843796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 8160392 - 8160460
Alignment:
Q  249 gacacggacatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaatta 317  Q
    |||||||||| ||||||||||||||| |||| ||||  ||| ||||||| |||||||| | ||||||||    
T  8160392 gacacggacaccgaacacgacactgacaccgctaataatttaagaaaattacataatttagtgtaatta 8160460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 35238240 - 35238201
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  35238240 accgataatattttgagaaaatgacataattcaatataat 35238201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 38134462 - 38134423
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  38134462 accgataataatttgagaaaatgacataattcaatgtaat 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 2143899 - 2143870
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  2143899 ttttgagaaaatgacataattcaatgtaat 2143870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 2144585 - 2144556
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  2144585 ttttgagaaaatgacataattcaatgtaat 2144556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 5937467 - 5937438
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  5937467 ttttgagaaaatgacataattcaatgtaat 5937438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 23165444 - 23165403
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaatta 317  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  23165444 accgataatattttgagaaaatgacatgattcaatgtgatta 23165403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 44172935 - 44172907
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  44172935 tttgagaaaatgacataattcaatgtaat 44172907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 71945 - 72055
Alignment:
Q  42 agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa 141  Q
    ||||||||||   ||||||||||||||||| |||||||||   ||||||| ||||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  71945 agttcatattcgtgcattctccattgataatcactcaata---atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagaa 72041  T
Q  142 taaatacaaacatg 155  Q
    | |||| |||||||    
T  72042 tgaatagaaacatg 72055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 61683 - 61716
Alignment:
Q  46 catattatagcattctccattgataagcactcaa 79  Q
    |||||| |||||||||||||||||||||||||||    
T  61683 catattctagcattctccattgataagcactcaa 61716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 11455 - 11345
Alignment:
Q  42 agttcatattatagcattctccattgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaa 141  Q
    ||||||||||   ||||||||||||| ||| |||||||||   ||||||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| |    
T  11455 agttcatattcgtgcattctccattggtaatcactcaata---atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagta 11359  T
Q  142 taaatacaaacatg 155  Q
    | |||| |||||||    
T  11358 tgaatagaaacatg 11345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 37496707 - 37496746
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37496707 accgataattttttgagaaaatgacataattcaatgtaat 37496746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 18513306 - 18513258
Alignment:
Q  267 gacactgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||| || |||||||||  |||||||||||||||||||||||||||||    
T  18513306 gacacagacaccgataataatttgagaaaatgacataattcaatgtaat 18513258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 13307853 - 13307919
Alignment:
Q  249 gacacggacatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||| |||| | |||||| || |||| | |||||  ||||||||||||||||||||||||||||||    
T  13307853 gacacagacaccaaacacggcattgatgcagataaaattttgagaaaatgacataattcaatgtaat 13307919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 26276054 - 26276024
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaatta 317  Q
    |||||||||||||||||||||||||||||||    
T  26276054 tttgagaaaatgacataattcaatgtaatta 26276024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 37203218 - 37203308
Alignment:
Q  227 taaccaatgaagcaaggacatagacacggacatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaatta 317  Q
    ||||| |||||||| ||| || |||||||||| || ||||||||| || || | ||||  ||||| |||||||||||||| | ||||||||    
T  37203218 taacctatgaagcacggatatggacacggacaccggacacgacacagacacggctaataatttgaaaaaatgacataatttagtgtaatta 37203308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 5176990 - 5177026
Alignment:
Q  279 gataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||| |||||||||||| |||||||||||||||||    
T  5176990 gataatattttgagaaaataacataattcaatgtaat 5177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 5654636 - 5654608
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  5654636 tttgagaaaatgacataattcaatgtaat 5654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 10546162 - 10546190
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  10546162 tttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 28663505 - 28663533
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaa 314  Q
    |||||||||||||||||||||||||||||    
T  28663505 ttttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 34589751 - 34589723
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  34589751 tttgagaaaatgacataattcaatgtaat 34589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 35480154 - 35480194
Alignment:
Q  273 gataccgataattttttgagaaaatgacataattcaatgta 313  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  35480154 gatactgattatttttttagaaaatgacataattcaatgta 35480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 44362664 - 44362708
Alignment:
Q  271 ctgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||| ||||||||  ||||||||||||||||||||| ||||||||    
T  44362664 ctgacaccgataaaattttgagaaaatgacataatttaatgtaat 44362708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 18325 - 18265
Alignment:
Q  64 attgataagcactcaatatatatcttgtggattagttttcgattcactaaaccaaacacaaata 127  Q
    ||||||||||||||||||   |||||||||||| ||||||||||| |||||||||| |||||||    
T  18325 attgataagcactcaata---atcttgtggatttgttttcgattcgctaaaccaaatacaaata 18265  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 11596514 - 11596472
Alignment:
Q  273 gataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  11596514 gataccgataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 41558699 - 41558668
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaattaa 318  Q
    ||||||||||||||||||||||||||||||||    
T  41558699 tttgagaaaatgacataattcaatgtaattaa 41558668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 2577279 - 2577197
Alignment:
Q  233 atgaagcaaggacatagacacggacatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||| ||||||||||||| |||  | ||| || || || |||||||||  |||||||||||||||||||| | ||||||    
T  2577279 atgaagcacggacatagacacgaacacaggacaagaaaccgacaccgataataatttgagaaaatgacataatttagtgtaat 2577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 26205819 - 26205777
Alignment:
Q  273 gataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||  ||||||||||||||||||||||| ||||||    
T  26205819 gataccgataaaattttgagaaaatgacataattcagtgtaat 26205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 28296331 - 28296368
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgta 313  Q
    |||||||||  |||||||||||||||||||||||||||    
T  28296331 accgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 30080547 - 30080518
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  30080547 ttttgagaaaatgacataattcaatgtaat 30080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 38749619 - 38749578
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaatta 317  Q
    |||||||||  ||||| |||||||||||||||||||||||||    
T  38749619 accgataataatttgaaaaaatgacataattcaatgtaatta 38749578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 43208319 - 43208291
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  43208319 tttgagaaaatgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 40681985 - 40682025
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaatt 316  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  40681985 accgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 18570975 - 18571014
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  18570975 accgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 43586051 - 43586022
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  43586051 ttttgagaaaatgacataattcaatgtaat 43586022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 1639497 - 1639532
Alignment:
Q  280 ataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 31548349 - 31548310
Alignment:
Q  276 accgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  31548349 accgataattatttgataaaatgacataattcaatgtaat 31548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 34201091 - 34201061
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaatta 317  Q
    |||||||||||||||||||||||||||||||    
T  34201091 tttgagaaaatgacataattcaatgtaatta 34201061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 1591307 - 1591340
Alignment:
Q  281 taattttttgagaaaatgacataattcaatgtaa 314  Q
    |||| |||||||||||||||||||||||||||||    
T  1591307 taatattttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 31119100 - 31119129
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  31119100 ttttgagaaaatgacataattcaatgtaat 31119129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 42874535 - 42874564
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  42874535 ttttgagaaaatgacataattcaatgtaat 42874564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 10441217 - 10441245
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  10441217 tttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 18964185 - 18964221
Alignment:
Q  281 taattttttgagaaaatgacataattcaatgtaatta 317  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  18964185 taatttttttagaaaatcacataattcaatgtaatta 18964221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 29198524 - 29198496
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  29198524 tttgagaaaatgacataattcaatgtaat 29198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Complemental strand, 40747818 - 40747788
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaatta 317  Q
    |||||||||||||||||||||||||||||||    
T  40747818 tttgagaaaatgacataattcaatgtaatta 40747788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 42005030 - 42004964
Alignment:
Q  249 gacacggacatcgaacacgacactgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||| ||||||| |||| || || ||||||  |||||||||||||||||||| | ||||||    
T  42005030 gacacggacaccgaacacaacacagacacggataataatttgagaaaatgacataatttagtgtaat 42004964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 18946080 - 18946051
Alignment:
Q  286 ttttgagaaaatgacataattcaatgtaat 315  Q
    ||||||||||||||||||||||||||||||    
T  18946080 ttttgagaaaatgacataattcaatgtaat 18946051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 3921681 - 3921709
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  3921681 tttgagaaaatgacataattcaatgtaat 3921709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 11571599 - 11571627
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  11571599 tttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 14332422 - 14332450
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  14332422 tttgagaaaatgacataattcaatgtaat 14332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 29230055 - 29230107
Alignment:
Q  263 acacgacactgataccgataattttttgagaaaatgacataattcaatgtaat 315  Q
    |||||||| ||| |||| ||||  |||||||||||||||||||| ||||||||    
T  29230055 acacgacattgacaccggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 24399696 - 24399660
Alignment:
Q  279 gataattttttgagaaaatgacataattcaatgtaat 315  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  24399696 gataaatttttgagacaatgacataattcaatgtaat 24399660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 40017414 - 40017386
Alignment:
Q  287 tttgagaaaatgacataattcaatgtaat 315  Q
    |||||||||||||||||||||||||||||    
T  40017414 tttgagaaaatgacataattcaatgtaat 40017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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