View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_25 (Length: 334)
Name: NF16054_low_25
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 31216506 - 31216179
Alignment:
| Q |
1 |
taattgaaagagaaatttatatgtgacattgtttatggtactagccgaatttgacatgtgggagtattccaatttttatgcaccgtctttaattagttaa |
100 |
Q |
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| T |
31216506 |
taattgaaagagaaatttatatgtgacattgtttatggtactagccgaatttgacatgtgggagtattccaatttttatgcaccgtctttaattagttaa |
31216407 |
T |
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| Q |
101 |
aagaaaactttggttgaaggttggttaaattgaactcactcacatttnnnnnnnnnttggtgcagtgtttagcgtactaataaatgaaaaaataagatgt |
200 |
Q |
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| T |
31216406 |
aagaaaactttggttgaagtttggttaaattgaactcactcacatttaaaaatttattggtgcagtgtttagcgtactgataaatgaaaaaataagatgt |
31216307 |
T |
|
| Q |
201 |
ataattaaaataagcgtatttaacgagaccctacaaacattttgcaactcaattttgtcccttac--------------aagcctcaaatatgatatgat |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
31216306 |
ataattaaaataagcgtatttaac--gaccctacaaacattttgcaactcaattttgtcccttacctcccacatcttataaggctcaaatatgatatgat |
31216209 |
T |
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| Q |
287 |
aaaagaacaatcaagtttcaagtctcatct |
316 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31216208 |
aaaagaacaatcaagtttcaagtctcatct |
31216179 |
T |
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