View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_28 (Length: 306)
Name: NF16054_low_28
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 17323154 - 17323440
Alignment:
| Q |
1 |
tggtagacaaccatttgatgaaatcttttcggcgaaggaattaatcgaataatattaatggagtcctttttcaatacattgatgtggaaattaccatgca |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17323154 |
tggtagacaaccatttgatgaagtcttttcggcgaaggaattagtccaataatattaatggagtcctttttcaatacattgatgtggaaattaccatgca |
17323253 |
T |
|
| Q |
101 |
tagggcagcctaacacatttatgttccagcaatccacaataaattctttcaagccttcatggagagtccacattttaagaaacttaaaatttgaagaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17323254 |
tagggcagcctaacacatttatgttccagcaatccacaataaactctttcaagccttcatggagagtccacattttaagaaacttaaaatttgaagaaaa |
17323353 |
T |
|
| Q |
201 |
atggtttatgtcagttttgaactcaaaaagcaatggataatgatctgatttattcctcacaataaactctagttggaagatgaataa |
287 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17323354 |
atggtttatgtcaattttgaactcaaaaagcaatggataatgatctgatttattcctcacaataaactctagttggaagatgaataa |
17323440 |
T |
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