View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_29 (Length: 299)
Name: NF16054_low_29
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 47717687 - 47717969
Alignment:
| Q |
1 |
gatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctctaaacaatca |
100 |
Q |
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| T |
47717687 |
gatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaatca |
47717786 |
T |
|
| Q |
101 |
ttgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaat |
200 |
Q |
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| T |
47717787 |
ttgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaat |
47717886 |
T |
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| Q |
201 |
cacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttc |
283 |
Q |
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| T |
47717887 |
cacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatttttc |
47717969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 47745477 - 47745755
Alignment:
| Q |
2 |
atttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctctaaacaatcat |
101 |
Q |
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| T |
47745477 |
atttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcat |
47745576 |
T |
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| Q |
102 |
tgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatc |
201 |
Q |
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| T |
47745577 |
tgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaacttacgacgagaatc |
47745676 |
T |
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| Q |
202 |
acttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcattt |
280 |
Q |
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| T |
47745677 |
acctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacattt |
47745755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 47712887 - 47713171
Alignment:
| Q |
4 |
ttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctctaaacaatcattg |
103 |
Q |
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| T |
47712887 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
47712986 |
T |
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| Q |
104 |
caatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
194 |
Q |
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| T |
47712987 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
47713086 |
T |
|
| Q |
195 |
gagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatt |
279 |
Q |
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| T |
47713087 |
gagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggttacatt |
47713171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 47759801 - 47760086
Alignment:
| Q |
3 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatgtaaataaataggaatttctgaaatagcacgctctaaacaatcatt |
102 |
Q |
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|||||| ||| ||||| |||||||||||||||||| |||| |||| |||||||| || || | ||||| ||||| ||||||| |||||||||| ||| |
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| T |
47759801 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt |
47759900 |
T |
|
| Q |
103 |
gcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaa---------gttgcattagcggtagcaaacttacga |
193 |
Q |
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| T |
47759901 |
gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga |
47760000 |
T |
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| Q |
194 |
cgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcatt |
279 |
Q |
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| T |
47760001 |
cgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacatt |
47760086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 47704888 - 47704941
Alignment:
| Q |
3 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttat |
56 |
Q |
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|||||| ||||||||||||||||||||||| |||| | || |||| |||||||| |
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| T |
47704888 |
tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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