View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_3 (Length: 642)
Name: NF16054_low_3
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 534; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 624
Target Start/End: Original strand, 6123014 - 6123627
Alignment:
| Q |
20 |
atgctcaagggaagtaaggttttgtttccaccgagatggtaaaacactaatgtctggaagcgtgccttctatctttagtgacttgagcttggaaggagga |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
6123014 |
atgctcaagggaagtaaggttttgtttccaccgagatggtaaaacacaaatgtctggaagtttgccttctatctttagtgacttgagcttggaaagagga |
6123113 |
T |
|
| Q |
120 |
gtggaggaagaggatgatgctatatccagtgtttctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttgtaaaagtaggcaagt |
219 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6123114 |
gcggaggaagaggatgatgctatatccagtgtttctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttggaaaagtaggcaagt |
6123213 |
T |
|
| Q |
220 |
cagtcaactttgggcatttgttgattattagttgagagagacggccgca---------cgagtgtttatctacactgacctgaccttccattctctccca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
6123214 |
cagtcaactttgggcatttgttgattattagttgagagagacggacgaatggccgctgcgagtgtttatctacactgacctgaccttccgttctcttcca |
6123313 |
T |
|
| Q |
311 |
tcccttgaaattcttacaaccactaaacttgagccgctccaatgacgggaagaatgttacttcagtgtgaaactcctctttatggtgtatgtactccaat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6123314 |
tcccttgaaattcttacaaccactaaacttgagccgctccaatgacgggaagaatgttacttcagtgtgaaacagctctttatggtgtatgtactccaat |
6123413 |
T |
|
| Q |
411 |
actttcatagaacttatctcaagagacttgaggaatgggagatgctctaatggtgggagagatttgcaattatcaaagccaaagagagagatgtgagaaa |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6123414 |
actttcatagaacttatctcaagagacttgaggaatgggagatgctctaatggtgggagagatttgcaattatcaaagccaaagagagagatgtgagaaa |
6123513 |
T |
|
| Q |
511 |
gacagtaaatatcagaaagccaattagaaaacttatcaccaggataccaccgaacttgtagtcttcttaggtattcgtggggacaaaggttttctaaaag |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6123514 |
gacagtaaatatcagaaagccaattagaaaacttatcaccaggataccaccgaacttgtagtcttcttaggtattcgtggggacaaaggttttctaaaag |
6123613 |
T |
|
| Q |
611 |
ttgcaagctgccct |
624 |
Q |
| |
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|||||||||||||| |
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|
| T |
6123614 |
ttgcaagctgccct |
6123627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 606
Target Start/End: Complemental strand, 6116424 - 6115829
Alignment:
| Q |
20 |
atgctcaagggaagtaaggttttgtttccaccgagatggtaaaacactaatgtctggaagcgtgccttctatctttagtgacttgagcttggaaggagga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6116424 |
atgctcaagggaagtaaggttttgtttccaccgagatggtaaaacactaatttctggaagtttgccttctatctttagtgacttgagcttggaaagagga |
6116325 |
T |
|
| Q |
120 |
gtggaggaagaggatgatgctatatccagtgtttctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttgtaaaagtaggcaagt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6116324 |
gtggaggaagaggatgatgctatatccagcgtttctttcaatggcgtcaccatagattcacacaactgcaattcctcaacatttggaaaagtaggcaagt |
6116225 |
T |
|
| Q |
220 |
cagtcaactttgggcatttgttgattattagttgagagagacggcc---------gcacgagtgtttatctacactgacctgaccttccattctctccca |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||||| || |||||||| ||| |
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|
| T |
6116224 |
cagtcaactctgggcatttgttgattattagttgagagagacgacccaatggcgggtgcgagagtttatctacactgacctgacgtttcattctctgcca |
6116125 |
T |
|
| Q |
311 |
tcccttgaaattcttacaaccactaaacttgagccgctccaatgacgggaagaatgttacttcagtgtgaaactcctctttatggtgtatgtactccaat |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | ||||||||||||||||| |
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|
| T |
6116124 |
tcccgtgaaattcttacaaccactaaacttgagccgctccaatgacgggaagaatgttgctgcagtgtgaaacacctcttcaaggtgtatgtactccaat |
6116025 |
T |
|
| Q |
411 |
actttcatagaacttatctcaagagacttgaggaatgggagatgctctaatggtgggagagatttgcaattatcaaagccaaagagagagatgtgagaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
6116024 |
actttcatagaacttatctcaagagacttgagacatgggagatgctctaatggtgggagagatttgcaattatcaaatccaaagagagagatgtaagaaa |
6115925 |
T |
|
| Q |
511 |
gacagtaaatatcagaaagccaattagaaaacttatcaccaggataccaccgaacttgtagtcttcttaggtattcgtggggacaaaggttttcta |
606 |
Q |
| |
|
|| || ||| |||||||||| | ||||||| || ||| |||||||||| || || |||||| |||| | || |||||||||||||||||||| |
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|
| T |
6115924 |
gatggtttatagaagaaagccaacttgaaaactcataacctggataccacctcacatgcagtctttttagattttggtggggacaaaggttttcta |
6115829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 115 - 606
Target Start/End: Complemental strand, 13752731 - 13752226
Alignment:
| Q |
115 |
gaggagtggaggaagaggatgatgctatatccagtgtttctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttgtaaaagtagg |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
13752731 |
gaggagtggaggacgaggatgatgctatatccggtgtttctttcaatggcttcaccatagattcacacaactgcaattcttcaacatttggaaaagtagg |
13752632 |
T |
|
| Q |
215 |
caagtcagtcaactttgggcatttgttgattattagttgagagaga-----------cggccgcacgagtgtttatctacactgacctgaccttccattc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||| |
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|
| T |
13752631 |
caagtcagtcaactttgggcatttgttgattattagttgagagagaggacccaatggcggccgc--gagagtatatctacactgacctgaccttccattc |
13752534 |
T |
|
| Q |
304 |
tctcccatcccttgaaattcttacaaccactaaacttgagccgctccaatgacgggaagaatgttacttcagtgtgaaactcctctttatggtgtatgta |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||| | ||||||||| |
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|
| T |
13752533 |
tctgccatcccttgaaattcttacaaccactaaactttagccgctccaatgacgggaagaatgttgctgcagtgtgaaacacctcttcaatgtgtatgta |
13752434 |
T |
|
| Q |
404 |
ctccaatactttcatagaacttatctcaagagacttgaggaatgggagatgctctaatggtgggagagatttgcaattatcaaagccaaagaga--gaga |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
13752433 |
ctccaatactttcatagaacttatctcaagagacatgaggtatgggagatgctctaatggtgggagagatttgcaattatcaaagccaaagagagagaga |
13752334 |
T |
|
| Q |
502 |
tgtgagaaagacagtaaatatcagaaagccaattagaaaacttatcaccaggataccaccgaacttgtagtcttcttaggtattcg---tggggacaaag |
598 |
Q |
| |
|
||| ||||||| || ||| |||||||||| | |||||||||||||| ||||||||||| || || |||||| |||| | || | ||||||||||| |
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|
| T |
13752333 |
tgtaagaaagatggtttatagaagaaagccaactcgaaaacttatcacctggataccaccgcacatgcagtctttttagattttggtactggggacaaag |
13752234 |
T |
|
| Q |
599 |
gttttcta |
606 |
Q |
| |
|
|||||||| |
|
|
| T |
13752233 |
gttttcta |
13752226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 6683036 - 6683093
Alignment:
| Q |
455 |
ctctaatggtgggagagatttgcaattatcaaagccaaagagagagatgtgagaaaga |
512 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||| ||||| |||| |||||||| |
|
|
| T |
6683036 |
ctctaatggtggaagacatttgcaattatcaaatccagagagaaagatacgagaaaga |
6683093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 6682733 - 6682841
Alignment:
| Q |
153 |
tctttcaatggcttcaccatagattcacacaactgcaattcctcaacatttgtaaaagtaggcaagtcagtcaactttgggcatttgttgattattagtt |
252 |
Q |
| |
|
||||||||||| |||| ||||||||||||| | ||||||| |||||||| |||| ||| ||| |||||||||||||||| | ||| |||| || |
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|
| T |
6682733 |
tctttcaatggtttcagtgtagattcacacaattcaaattccttaacatttgggaaaggaggtaagcaagtcaactttgggcatccatagatcattaatt |
6682832 |
T |
|
| Q |
253 |
gagagagac |
261 |
Q |
| |
|
||||||||| |
|
|
| T |
6682833 |
gagagagac |
6682841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 3280983 - 3281032
Alignment:
| Q |
421 |
aacttatctcaagagacttgaggaatgggagatgctctaatggtgggaga |
470 |
Q |
| |
|
||||||| | ||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3280983 |
aacttatatgaagtgacttaaggaatgggagatgctccaatggtgggaga |
3281032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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