View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_31 (Length: 294)

Name: NF16054_low_31
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_low_31
NF16054_low_31
[»] chr2 (4 HSPs)
chr2 (15-277)||(2681795-2682057)
chr2 (187-277)||(2672718-2672808)
chr2 (181-251)||(37713572-37713642)
chr2 (173-206)||(2680220-2680253)
[»] chr4 (2 HSPs)
chr4 (180-277)||(36366669-36366766)
chr4 (16-99)||(36366500-36366583)
[»] chr8 (5 HSPs)
chr8 (181-277)||(23189886-23189982)
chr8 (181-277)||(23182509-23182605)
chr8 (178-260)||(15805167-15805249)
chr8 (223-269)||(15812999-15813045)
chr8 (194-258)||(15722337-15722401)
[»] chr3 (4 HSPs)
chr3 (180-277)||(3103479-3103576)
chr3 (223-277)||(3123053-3123107)
chr3 (223-277)||(3132741-3132795)
chr3 (220-272)||(5829914-5829966)
[»] chr7 (2 HSPs)
chr7 (180-269)||(20294828-20294917)
chr7 (181-251)||(20243801-20243871)
[»] chr1 (1 HSPs)
chr1 (178-254)||(47619488-47619564)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 2682057 - 2681795
Alignment:
Q  15 aatatcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagtagtgcaatgtttcata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2682057 aatatcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagtagtgcaatgtttcata 2681958  T
Q  115 acagtactccttaataaaataccaaatataaaataacttatcattttgtatgttttgttaatgtacagtggctatatgtctcctgaatatgctatggacg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2681957 acagtactccttaataaaataccaaatataaaataacttatcattttgtatgttttgttaatgtacagtggctatatgtctcctgaatatgctatggacg 2681858  T
Q  215 gaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2681857 gaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 2681795  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 2672718 - 2672808
Alignment:
Q  187 tatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    ||||||||||| |||||||| ||||  ||| | || || |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||    
T  2672718 tatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgttttcagttttggagttctcgtgctagaaatcataagtg 2672808  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 37713642 - 37713572
Alignment:
Q  181 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttgg 251  Q
    ||||| ||||||||||| || |||||| |||| |||  ||| ||| | |||||||||||||||||||||||    
T  37713642 agtggatatatgtctccagagtatgctttggatggattcttttcaatcaaatcagatgtttttagctttgg 37713572  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 2680220 - 2680253
Alignment:
Q  173 taatgtacagtggctatatgtctcctgaatatgc 206  Q
    ||||||||||||| ||||||||||||||||||||    
T  2680220 taatgtacagtggttatatgtctcctgaatatgc 2680253  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 36366669 - 36366766
Alignment:
Q  180 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    |||||||||||||||||| || ||||||||||| |||| ||||||||| ||||| |||||||| || ||||| ||||||||| | || ||||||||||    
T  36366669 cagtggctatatgtctccagagtatgctatggatggaatcttctcagtgaaatctgatgttttcagttttggtgttcttgtgatggaaatcataagtg 36366766  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 36366500 - 36366583
Alignment:
Q  16 atatcagactttgggatggctagaatatttggcagagatcaaactgaagcaaatacactgagagttgttggaacatagtgagta 99  Q
    ||||||||||| |||||||| |||||||||||||  ||||| || || ||||||||| | ||||||||||||||||||| ||||    
T  36366500 atatcagacttcgggatggcaagaatatttggcacggatcagacagaggcaaatacagttagagttgttggaacatagtaagta 36366583  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 23189886 - 23189982
Alignment:
Q  181 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    |||||||| ||||||||||||||||||||||| ||    |||||||||||||| || || |||||||||||||||||| || ||||||| |||||||    
T  23189886 agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttggagttcttctgttagagattataagtg 23189982  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 23182509 - 23182605
Alignment:
Q  181 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    |||||||| ||||||||||||||||||||||| ||    |||||||||||||| || || || ||||||||||| ||| || ||||||| |||||||    
T  23182509 agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtcttcagctttggagtgcttttgttagagattataagtg 23182605  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 15805249 - 15805167
Alignment:
Q  178 tacagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgt 260  Q
    |||||||| || ||| |||| |||||||||||||  ||    || ||||| ||||| ||||||||||||||||||||||||||    
T  15805249 tacagtggatacatggctccagaatatgctatggctggcttattttcagtgaaatccgatgtttttagctttggagttcttgt 15805167  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 15813045 - 15812999
Alignment:
Q  223 tcagttaaatcagatgtttttagctttggagttcttgtgctagagat 269  Q
    ||||| ||||| |||||||| |||||||||||||||||| |||||||    
T  15813045 tcagtgaaatccgatgttttcagctttggagttcttgtgttagagat 15812999  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 15722401 - 15722337
Alignment:
Q  194 ctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttctt 258  Q
    |||| |||||||||||||  |||   || ||||||||||| ||||||| ||||||||||||||||    
T  15722401 ctccagaatatgctatggttggagtgttttcagttaaatccgatgtttatagctttggagttctt 15722337  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 3103479 - 3103576
Alignment:
Q  180 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    |||||| |||||| |||| |||||||||||||| |||   || ||||| || ||||||||||| |||||||| |||||| ||||||||||||| ||||    
T  3103479 cagtggatatatggctccagaatatgctatggaaggattgttttcagtaaagtcagatgttttcagctttggtgttcttttgctagagatcatcagtg 3103576  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 3123053 - 3123107
Alignment:
Q  223 tcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    ||||| || ||||||||||| |||||||| |||||| ||||||||||||| ||||    
T  3123053 tcagtgaagtcagatgttttcagctttggcgttcttttgctagagatcatcagtg 3123107  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 3132795 - 3132741
Alignment:
Q  223 tcagttaaatcagatgtttttagctttggagttcttgtgctagagatcataagtg 277  Q
    ||||| || ||||||||||| |||||||| |||||| ||||||||||||| ||||    
T  3132795 tcagtgaagtcagatgttttcagctttggcgttcttttgctagagatcatcagtg 3132741  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 5829914 - 5829966
Alignment:
Q  220 ttctcagttaaatcagatgtttttagctttggagttcttgtgctagagatcat 272  Q
    |||||| | ||||| ||||||||||||||||||||| |||| || ||||||||    
T  5829914 ttctcaataaaatctgatgtttttagctttggagttgttgtacttgagatcat 5829966  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 20294828 - 20294917
Alignment:
Q  180 cagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagttcttgtgctagagat 269  Q
    ||||||||||||||||||||||||||| ||| | |||   || ||||  ||||||||||||||||||||||| ||| |  ||||||||||    
T  20294828 cagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagat 20294917  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 20243801 - 20243871
Alignment:
Q  181 agtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttgg 251  Q
    |||||||| ||||||||||||||||| ||| | |||   || ||||  |||||||||||||||||||||||    
T  20243801 agtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttgg 20243871  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 47619488 - 47619564
Alignment:
Q  178 tacagtggctatatgtctcctgaatatgctatggacggaaacttctcagttaaatcagatgtttttagctttggagt 254  Q
    |||||||| |||||||||||||||||||| |||   ||||| ||||| |  |||||||| |||||||| ||||||||    
T  47619488 tacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagt 47619564  T

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