View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16054_low_33 (Length: 278)

Name: NF16054_low_33
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16054_low_33
NF16054_low_33
[»] chr3 (25 HSPs)
chr3 (1-263)||(36545343-36545605)
chr3 (1-263)||(36562709-36562971)
chr3 (1-107)||(21983053-21983159)
chr3 (161-261)||(25998426-25998525)
chr3 (155-261)||(8880117-8880222)
chr3 (155-261)||(35406308-35406413)
chr3 (177-258)||(2557161-2557241)
chr3 (102-261)||(34435198-34435361)
chr3 (109-159)||(30741109-30741159)
chr3 (195-261)||(30741155-30741220)
chr3 (109-159)||(52184257-52184307)
chr3 (192-261)||(1362433-1362501)
chr3 (192-261)||(8320744-8320812)
chr3 (177-261)||(36238599-36238682)
chr3 (115-151)||(47133584-47133620)
chr3 (194-248)||(5506584-5506638)
chr3 (155-253)||(19275808-19275905)
chr3 (195-261)||(30317266-30317331)
chr3 (192-261)||(35555124-35555191)
chr3 (192-258)||(41990956-41991021)
chr3 (115-165)||(48051700-48051750)
chr3 (213-251)||(51981591-51981629)
chr3 (192-261)||(6125478-6125546)
chr3 (192-261)||(51063597-51063665)
chr3 (177-261)||(52184292-52184375)
[»] chr5 (35 HSPs)
chr5 (1-107)||(29369763-29369869)
chr5 (115-261)||(7156680-7156831)
chr5 (155-259)||(7614289-7614392)
chr5 (177-261)||(23591382-23591465)
chr5 (192-263)||(12282371-12282441)
chr5 (155-261)||(41733553-41733658)
chr5 (154-261)||(5102080-5102186)
chr5 (192-263)||(11783504-11783574)
chr5 (178-261)||(34589186-34589268)
chr5 (194-248)||(11576170-11576224)
chr5 (192-258)||(42423381-42423446)
chr5 (109-261)||(15499390-15499546)
chr5 (192-261)||(29524641-29524709)
chr5 (192-261)||(35639514-35639582)
chr5 (213-258)||(36944171-36944216)
chr5 (192-261)||(42710034-42710102)
chr5 (109-165)||(23591444-23591500)
chr5 (109-165)||(35639576-35639632)
chr5 (177-261)||(36761864-36761947)
chr5 (178-253)||(22777935-22778009)
chr5 (189-248)||(41356838-41356897)
chr5 (134-168)||(5049472-5049506)
chr5 (109-151)||(22778015-22778057)
chr5 (192-261)||(77088-77156)
chr5 (192-261)||(16217625-16217693)
chr5 (182-243)||(24464327-24464387)
chr5 (177-258)||(27812315-27812395)
chr5 (192-261)||(37530022-37530090)
chr5 (109-165)||(6788814-6788870)
chr5 (225-261)||(6788922-6788958)
chr5 (109-169)||(11783468-11783528)
chr5 (225-261)||(12939078-12939114)
chr5 (225-261)||(12953163-12953199)
chr5 (225-261)||(24172086-24172122)
chr5 (115-159)||(27812286-27812330)
[»] chr1 (20 HSPs)
chr1 (1-107)||(16064829-16064935)
chr1 (195-263)||(31497214-31497281)
chr1 (195-260)||(38059243-38059308)
chr1 (195-261)||(36740235-36740300)
chr1 (155-248)||(34086817-34086910)
chr1 (177-261)||(3569666-3569749)
chr1 (189-261)||(30358792-30358863)
chr1 (192-261)||(45900847-45900915)
chr1 (101-165)||(3569623-3569687)
chr1 (177-261)||(27748315-27748398)
chr1 (225-261)||(38624794-38624830)
chr1 (109-152)||(47325851-47325894)
chr1 (225-263)||(2458405-2458443)
chr1 (195-261)||(11824300-11824365)
chr1 (155-253)||(12769856-12769953)
chr1 (115-165)||(28954824-28954874)
chr1 (192-261)||(39326324-39326392)
chr1 (192-261)||(50585520-50585588)
chr1 (109-165)||(11824362-11824418)
chr1 (225-261)||(12015408-12015444)
[»] chr2 (16 HSPs)
chr2 (109-261)||(36985866-36986012)
chr2 (155-261)||(10034355-10034460)
chr2 (189-261)||(7455246-7455317)
chr2 (178-261)||(15264784-15264866)
chr2 (194-248)||(239973-240027)
chr2 (195-261)||(36935371-36935436)
chr2 (104-151)||(15264712-15264759)
chr2 (109-261)||(38325044-38325193)
chr2 (120-261)||(5774808-5774953)
chr2 (195-261)||(16495896-16495961)
chr2 (192-261)||(1875291-1875359)
chr2 (174-211)||(6221954-6221991)
chr2 (116-165)||(30524442-30524491)
chr2 (225-261)||(8876391-8876427)
chr2 (134-178)||(11447861-11447905)
chr2 (225-261)||(42520516-42520552)
[»] chr4 (27 HSPs)
chr4 (156-261)||(317861-317965)
chr4 (155-263)||(2942920-2943027)
chr4 (174-261)||(55900371-55900457)
chr4 (191-261)||(6245009-6245078)
chr4 (155-260)||(37113631-37113735)
chr4 (163-252)||(40675394-40675482)
chr4 (109-165)||(19802621-19802677)
chr4 (177-261)||(39839423-39839506)
chr4 (178-261)||(54999400-54999482)
chr4 (192-258)||(32013108-32013173)
chr4 (192-261)||(19801139-19801207)
chr4 (116-165)||(39839395-39839444)
chr4 (192-261)||(53284719-53284787)
chr4 (177-261)||(19802559-19802642)
chr4 (177-261)||(36180663-36180746)
chr4 (103-151)||(53443777-53443825)
chr4 (192-263)||(33984808-33984878)
chr4 (110-165)||(43375416-43375471)
chr4 (192-261)||(43375353-43375422)
chr4 (225-263)||(44449176-44449214)
chr4 (178-260)||(55345400-55345481)
chr4 (199-252)||(30649904-30649956)
chr4 (192-261)||(47633165-47633233)
chr4 (196-261)||(48057972-48058036)
chr4 (192-261)||(49334497-49334565)
chr4 (213-261)||(31220671-31220719)
chr4 (225-261)||(45559988-45560024)
[»] chr6 (10 HSPs)
chr6 (177-261)||(12131214-12131297)
chr6 (192-261)||(24118501-24118569)
chr6 (178-261)||(22708032-22708114)
chr6 (192-261)||(18368902-18368970)
chr6 (192-261)||(20646407-20646475)
chr6 (192-261)||(32986252-32986320)
chr6 (203-261)||(5957010-5957067)
chr6 (155-253)||(14856217-14856315)
chr6 (225-261)||(13755642-13755678)
chr6 (225-261)||(25022296-25022332)
[»] chr8 (22 HSPs)
chr8 (109-261)||(5838976-5839120)
chr8 (155-261)||(14912477-14912582)
chr8 (192-261)||(22215830-22215898)
chr8 (189-261)||(43800095-43800166)
chr8 (115-178)||(31719463-31719526)
chr8 (155-216)||(5964634-5964695)
chr8 (192-261)||(38745400-38745468)
chr8 (192-261)||(40530211-40530279)
chr8 (1-77)||(4023126-4023202)
chr8 (109-152)||(34900176-34900219)
chr8 (115-178)||(35252456-35252519)
chr8 (117-159)||(3153715-3153757)
chr8 (174-212)||(9339858-9339896)
chr8 (191-261)||(25099531-25099600)
chr8 (195-261)||(41669579-41669644)
chr8 (194-248)||(42353122-42353176)
chr8 (102-151)||(14912572-14912621)
chr8 (192-261)||(35397331-35397399)
chr8 (192-261)||(39734741-39734809)
chr8 (225-261)||(17123379-17123415)
chr8 (225-261)||(20696690-20696726)
chr8 (225-261)||(35159597-35159633)
[»] chr7 (34 HSPs)
chr7 (196-261)||(28957438-28957502)
chr7 (189-261)||(42327427-42327498)
chr7 (178-261)||(43338375-43338457)
chr7 (155-261)||(44571474-44571580)
chr7 (192-258)||(982258-982323)
chr7 (161-215)||(31029863-31029917)
chr7 (110-152)||(43002652-43002694)
chr7 (195-261)||(46350122-46350187)
chr7 (109-159)||(48312787-48312837)
chr7 (192-261)||(28493548-28493616)
chr7 (195-263)||(42327031-42327098)
chr7 (177-261)||(48312822-48312905)
chr7 (130-165)||(19756656-19756691)
chr7 (178-261)||(29993359-29993441)
chr7 (195-258)||(35648131-35648193)
chr7 (109-152)||(43158097-43158140)
chr7 (134-168)||(21442107-21442141)
chr7 (134-168)||(28235988-28236022)
chr7 (161-215)||(42980352-42980406)
chr7 (195-261)||(46536837-46536902)
chr7 (134-172)||(48935966-48936004)
chr7 (192-261)||(6244588-6244656)
chr7 (192-261)||(31226208-31226276)
chr7 (192-261)||(36821352-36821420)
chr7 (115-168)||(39708624-39708677)
chr7 (192-261)||(43157998-43158066)
chr7 (225-261)||(4061349-4061385)
chr7 (225-261)||(27827471-27827507)
chr7 (155-215)||(30583297-30583357)
chr7 (225-261)||(31031307-31031343)
chr7 (213-261)||(34821414-34821462)
chr7 (225-261)||(42328371-42328407)
chr7 (104-152)||(46350036-46350084)
chr7 (225-261)||(46614980-46615016)
[»] scaffold0330 (1 HSPs)
scaffold0330 (192-261)||(7733-7801)
[»] scaffold0464 (1 HSPs)
scaffold0464 (192-253)||(5388-5448)
[»] scaffold0325 (1 HSPs)
scaffold0325 (192-261)||(19087-19155)
[»] scaffold0039 (1 HSPs)
scaffold0039 (155-216)||(76922-76983)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 36545605 - 36545343
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36545605 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 36545506  T
Q  101 ctattaacgctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36545505 ctattaacgctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgata 36545406  T
Q  201 gtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36545405 gtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 36545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 36562709 - 36562971
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36562709 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 36562808  T
Q  101 ctattaacgctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36562809 ctattaacgctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgata 36562908  T
Q  201 gtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36562909 gtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 36562971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21983053 - 21983159
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||   | ||||||||||||||    
T  21983053 gagatgattggacttgagaaagagcaagacaacttgaccatttcctactcatggaagccacgattttgaaggttaagaataaacctaagatatattatta 21983152  T
Q  101 ctattaa 107  Q
    |||||||    
T  21983153 ctattaa 21983159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 25998426 - 25998525
Alignment:
Q  161 gctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttga 260  Q
    ||||||||||| ||| |||||| |||| || ||||||| || |||||||||||||| |||| | ||||||| ||||||||||| ||||||||| ||||||    
T  25998426 gctgaaaaattcactgatagctgatgactgatagctgacagcttatagctgaaaaa-ctcatttattaaaagtaatgtgtttggtaaaattagttgttga 25998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 8880222 - 8880117
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| |||||||| ||| || |||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| |||||||||     
T  8880222 ctgatagctgaaaagttagctgatagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagc 8880124  T
Q  255 tgttgaa 261  Q
    |||||||    
T  8880123 tgttgaa 8880117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 35406413 - 35406308
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| ||||||||  || || |||||| |||| || ||| ||||||||||||||||||||  ||  || ||||||||||||||||||| |||||||||     
T  35406413 ctgatagctgaaaagctagctgatagctgatgactgatagttgatagtttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagc 35406315  T
Q  255 tgttgaa 261  Q
    |||||||    
T  35406314 tgttgaa 35406308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 2557161 - 2557241
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||||||||||||| ||||    
T  2557161 atagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttgataaaattagctgtt 2557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 261
Target Start/End: Original strand, 34435198 - 34435361
Alignment:
Q  102 tattaacgctctatttggtaaaaataagtcataagctagcttatagctgatga-----ctgatggctgaaaaattaacttatagctaatgattggtagct 196  Q
    |||||| ||||| ||||||||||| |||  ||||||||||| ||||||||| |     ||||| ||||||||  || || ||||||  |   || |||||    
T  34435198 tattaaggctctgtttggtaaaaagaagctataagctagctgatagctgataagctagctgatagctgaaaagctagctgatagctggtagctgatagct 34435297  T
Q  197 gatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  34435298 gatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 34435361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 30741109 - 30741159
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgat 159  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||||||||||    
T  30741109 gctctgtttggtaaaaataagctataagctagctgatagctgatgactgat 30741159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 30741155 - 30741220
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  30741155 ctgatagtttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 30741220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 52184257 - 52184307
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgat 159  Q
    ||||||||| |||||||||||| ||||||||||| |||||| |||||||||    
T  52184257 gctctatttagtaaaaataagttataagctagctgatagctaatgactgat 52184307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 1362501 - 1362433
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  1362501 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 1362433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 8320744 - 8320812
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  8320744 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 8320812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 36238682 - 36238599
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || ||| |||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  36238682 atagctgatgactgatagttgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 36238599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 47133620 - 47133584
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctga 151  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47133620 tttggtaaaattaagtcataagctagcttatagctga 47133584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 5506638 - 5506584
Alignment:
Q  194 gctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    |||||||| |||||||||||||| ||| || ||||||| ||||||||||| ||||    
T  5506638 gctgatagcttatagctgaaaaagctcgcttattaaaattaatgtgtttggtaaa 5506584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 19275905 - 19275808
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    ||||| |||||||| ||| || |||||| ||||  | |||||||||| |||||| ||||||  ||  || ||||||||||||||||||| |||||||||    
T  19275905 ctgatagctgaaaagttagctgatagctgatgacggatagctgatagcttatagttgaaaag-cttgcttattaaaaataatgtgtttggtaaaattag 19275808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 30317266 - 30317331
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  30317266 ctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 30317331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 35555191 - 35555124
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| ||||| ||||||   |||| | ||||||||||||||||||| ||||||||| |||||||    
T  35555191 tagctgatagattataactgaaag--ctcatttattaaaaataatgtgtttggtaaaattagttgttgaa 35555124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 41990956 - 41991021
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| ||||    
T  41990956 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgtt 41991021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 48051750 - 48051700
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    |||||||||||||||  |||||||| || |||||||||||||||| |||||    
T  48051750 tttggtaaaaataagctataagctaactgatagctgatgactgatagctga 48051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 51981629 - 51981591
Alignment:
Q  213 aaaaactcactcattaaaaataatgtgtttgataaaatt 251  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  51981629 aaaagctcacttattaaaaataatgtgtttgataaaatt 51981591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 6125546 - 6125478
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||| ||||| |||||||||||||| |||  | ||||||||||||||||||| ||||||||  |||||||    
T  6125546 tagcagatagcttatagctgaaaaa-ctcgtttattaaaaataatgtgtttggtaaaattaattgttgaa 6125478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 51063665 - 51063597
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| ||||| |||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  51063665 tagctgatagcttataactgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 51063597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 52184292 - 52184375
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||| || || ||||||  |||||||||||||  ||  || ||||||||||| ||||||| ||||||||| |||||||    
T  52184292 atagctaatgactgatatctgataacttatagctgaaaag-cttgcttattaaaaataacgtgtttggtaaaattagttgttgaa 52184375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 29369869 - 29369763
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||   | ||||||||||||||    
T  29369869 gagatgattggacttgagaaagagcaagacaacttgaccatttcctactcatggaagccacgattttgaaggttaagaataaacctaagatatattatta 29369770  T
Q  101 ctattaa 107  Q
    |||||||    
T  29369769 ctattaa 29369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 261
Target Start/End: Original strand, 7156680 - 7156831
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgac-----tgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagc 209  Q
    |||||||||||| ||  ||||||||||| ||||||||| |      |||| ||||||||  || || |||||| |||| || |||||||||| |||||||    
T  7156680 tttggtaaaaatcagatataagctagctcatagctgataagctagttgatagctgaaaagctagctgatagctgatgactgatagctgatagcttatagc 7156779  T
Q  210 tgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||  ||  | ||||||||||||||||||| ||||||||| |||||||    
T  7156780 tgaaaaagatcgtttattaaaaataatgtgtttggtaaaattagctgttgaa 7156831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 7614289 - 7614392
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| ||||||||  || || ||| || |||| || |||||||||||||||| |||||||| ||  || |||||||||||||||||||||||||||||     
T  7614289 ctgatagctgaaaagctagctgataactgatgactgatagctgatagtttataactgaaaaa-cttgcttattaaaaataatgtgtttgataaaattagc 7614387  T
Q  255 tgttg 259  Q
    |||||    
T  7614388 tgttg 7614392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 23591465 - 23591382
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||| || |||||||| | |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  23591465 atagctaatgactgatagctgatggcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 23591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 12282441 - 12282371
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    |||||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||||    
T  12282441 tagctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaaat 12282371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 41733553 - 41733658
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| ||||||||  || || |||||| |||| ||||||||||||  ||||||||| |||||||  || ||||||||||||||||||| ||||||||      
T  41733553 ctgatagctgaaaagctagctgatagctgatgactggtagctgataacttatagctg-aaaaacttgcttattaaaaataatgtgtttggtaaaattaac 41733651  T
Q  255 tgttgaa 261  Q
    |||||||    
T  41733652 tgttgaa 41733658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 261
Target Start/End: Original strand, 5102080 - 5102186
Alignment:
Q  154 actgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    |||||| ||||||||| || |||||| || |||| ||  ||||||||| || ||| ||||||| |||  |  ||||||||||||||||||||||||||||    
T  5102080 actgatagctgaaaaactagcttataactgatgactgacagctgatagcttgtagttgaaaaa-ctcgtttgttaaaaataatgtgtttgataaaattag 5102178  T
Q  254 gtgttgaa 261  Q
     |||||||    
T  5102179 ttgttgaa 5102186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 11783504 - 11783574
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    |||||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| ||| |||||    
T  11783504 tagctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgtcgaaat 11783574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 34589186 - 34589268
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  34589186 tagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 34589268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 11576224 - 11576170
Alignment:
Q  194 gctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    |||||||| |||||||||||||| ||| || ||||||| ||||||||||||||||    
T  11576224 gctgatagcttatagctgaaaaagctcgcttattaaaattaatgtgtttgataaa 11576170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 42423446 - 42423381
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| ||||    
T  42423446 tagctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgtt 42423381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 15499546 - 15499390
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatga-----ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtt 203  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||| |     ||||| ||||||||  || || ||||||  |   || ||| |||||| |    
T  15499546 gctctgtttggtaaaaataagctataagctagctgatagctgataagctagctgatagctgaaaagctagctgatagctggtagctgatagttgatagct 15499447  T
Q  204 tatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  15499446 tatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 15499390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 29524641 - 29524709
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  29524641 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 29524709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 35639582 - 35639514
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || |||||||||||||| |||||||||||||| |||||||    
T  35639582 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtatttgataaaattagctgttgaa 35639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 36944171 - 36944216
Alignment:
Q  213 aaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||    
T  36944171 aaaagctcacttattaaaaataatgtgtttgataaaattagctgtt 36944216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 42710102 - 42710034
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  42710102 tagcttatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 42710034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 23591500 - 23591444
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||| |||||||||||||||  ||||||||||| |||||| ||||||||| |||||    
T  23591500 gctctgtttggtaaaaataagctataagctagctgatagctaatgactgatagctga 23591444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 35639632 - 35639576
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||| |||||||||||||||  ||||||||||| |||| ||||||||||| |||||    
T  35639632 gctctgtttggtaaaaataagctataagctagctgatagttgatgactgatagctga 35639576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 36761947 - 36761864
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || || ||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  36761947 atagctgatgactgataactgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 36761864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 22778009 - 22777935
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    ||||| |||| || |||||||||||||||||||| |||| ||  || |||||||||||||| |||| |||||||||    
T  22778009 tagctgatgactgatagctgatagtttatagctg-aaaagcttgcttattaaaaataatgtttttggtaaaattag 22777935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 41356897 - 41356838
Alignment:
Q  189 tggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    ||||||||||||| |||||||||||||| ||| ||  |||||| ||||||||||| ||||    
T  41356897 tggtagctgatagcttatagctgaaaaagctcgcttgttaaaattaatgtgtttggtaaa 41356838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 5049472 - 5049506
Alignment:
Q  134 aagctagcttatagctgatgactgatggctgaaaa 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  5049472 aagctagcttatagctgatgactgatagctgaaaa 5049506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 22778057 - 22778015
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctga 151  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||    
T  22778057 gctctgtttggtaaaaataagttataagctagctgatagctga 22778015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 77156 - 77088
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| | |||| |||||| | || || ||||||||||||||||||| ||||||||| |||||||    
T  77156 tagctgatagctgatagatgaaaagattc-cttattaaaaataatgtgtttggtaaaattagatgttgaa 77088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 16217625 - 16217693
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||   |  || ||||||||||||||||||| ||||||||| |||||||    
T  16217625 tagctgatagcttatagctgaaaagtttg-cttattaaaaataatgtgtttggtaaaattagttgttgaa 16217693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 24464387 - 24464327
Alignment:
Q  182 taatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttg 243  Q
    |||||| || ||| |||||| |||||||||||||| ||| || |||||||||||||||||||    
T  24464387 taatgactgataggtgatagcttatagctgaaaaa-ctcgcttattaaaaataatgtgtttg 24464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 27812315 - 27812395
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||||| |||| || ||| |||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| ||||    
T  27812315 atagctgatgactgatagttgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgtt 27812395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 37530022 - 37530090
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  ||  |||||||||||||||||| ||||||||| |||||||    
T  37530022 tagctgatagcttatagctgaaaag-cttgcttgttaaaaataatgtgtttggtaaaattagctgttgaa 37530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 6788814 - 6788870
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||  ||||| |||||    
T  6788814 gctctgtttggtaaaaataagctataagctagctgatagctgatagctgatagctga 6788870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 6788922 - 6788958
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  6788922 attaaaaataatgtgtttggtaaaattagctgttgaa 6788958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 11783468 - 11783528
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaa 169  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||  || || |||||||||    
T  11783468 gctctgtttggtaaaaataagctataagctagctgatagctgatagcttatagctgaaaaa 11783528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 12939078 - 12939114
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12939078 attaaaaataatgtgtttggtaaaattagttgttgaa 12939114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 12953163 - 12953199
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12953163 attaaaaataatgtgtttggtaaaattagttgttgaa 12953199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 24172122 - 24172086
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  24172122 attaaaaataatgtgtttggtaaaattagctgttgaa 24172086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 27812286 - 27812330
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgat 159  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  27812286 tttggtaaaaataagctataagttagctgatagctgatgactgat 27812330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16064829 - 16064935
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaagaatatgtccaagatatattatta 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||  | |||||||||||||||| | | ||||||||||||||    
T  16064829 gagatgattggacttgagaaagagcaagacaacttgaccatttcctactatgggaagccacggttttgaaggttaagaataagcctaagatatattatta 16064928  T
Q  101 ctattaa 107  Q
    || ||||    
T  16064929 ctgttaa 16064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 31497281 - 31497214
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  31497281 ctgatagcttatagctgaaaaa-ctcacttattaaaaataatgtgtttgataaaattagttgttgaaat 31497214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 38059308 - 38059243
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttga 260  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||| ||||||    
T  38059308 ctgatagtttatagctgaaaaaactcgtttattaaaaataatgtgtttggtaaaattagttgttga 38059243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 36740300 - 36740235
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||| ||  || ||||||||||||||||||||||||||||| |||||||    
T  36740300 ctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttgataaaattagctgttgaa 36740235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 34086910 - 34086817
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    ||||| |||||||| ||| ||||||||| |||| || ||| | |||| |||||||||||||| ||| || ||||||| ||||||||||| ||||    
T  34086910 ctgatagctgaaaagttagcttatagctgatgactgatagtttatagcttatagctgaaaaagctcgcttattaaaattaatgtgtttgttaaa 34086817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 3569666 - 3569749
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  3569666 atagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 3569749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 30358863 - 30358792
Alignment:
Q  189 tggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  30358863 tggtagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 30358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 45900915 - 45900847
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  45900915 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 45900847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 3569623 - 3569687
Alignment:
Q  101 ctattaacgctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||||| ||||| || ||||||||||||  |||| |||||| |||||||||||||||| |||||    
T  3569623 ctattaaggctctgttgggtaaaaataagctataaactagctgatagctgatgactgatagctga 3569687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 27748398 - 27748315
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || ||| ||||||||||||||||||||  ||  || |||||||||||||| |||| ||||||||| |||||||    
T  27748398 atagctgatgactgatagttgatagtttatagctgaaaac-cttgcttattaaaaataatgtatttggtaaaattagctgttgaa 27748315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 38624830 - 38624794
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38624830 attaaaaataatgtgtttgataaaattagttgttgaa 38624794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 47325851 - 47325894
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgat 152  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||    
T  47325851 gctctgtttggtaaaaataagttataagctagctgatagctgat 47325894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 2458405 - 2458443
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  2458405 attaaaaataatgtgtttggtaaaattagttgttgaaat 2458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 11824365 - 11824300
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  11824365 ctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagatgttgaa 11824300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 12769856 - 12769953
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    ||||| |||||||| ||| || |||| | |||| |  |||||||||| ||||||||||||| | |  || ||||||||||||||||||| |||||||||    
T  12769856 ctgatagctgaaaagttagctgatagttgatgactaatagctgatagcttatagctgaaaagattg-cttattaaaaataatgtgtttggtaaaattag 12769953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 28954824 - 28954874
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    |||||||||||||||  ||||||||||| ||||| |||||||||| |||||    
T  28954824 tttggtaaaaataagctataagctagctgatagccgatgactgatagctga 28954874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 39326392 - 39326324
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||   | ||||||||||||||||||| ||||||||| |||||||    
T  39326392 tagctgatagcttatagctgaaaag-cttgtttattaaaaataatgtgtttggtaaaattagctgttgaa 39326324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 50585520 - 50585588
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  50585520 tagcttatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 50585588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 11824418 - 11824362
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    |||||||||||||||||||||  ||||||||| | |||||||||  |||||| ||||    
T  11824418 gctctatttggtaaaaataagctataagctagttgatagctgatagctgatgactga 11824362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 12015444 - 12015408
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12015444 attaaaaataatgtgtttggtaaaattagctgttgaa 12015408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 261
Target Start/End: Original strand, 36985866 - 36986012
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatag 208  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||||||||| |||||     || ||||||||| |||| || |||||||||| ||||||    
T  36985866 gctctgtttggtaaaaataagctataagctagctgatagctgatgactgatagctga-----tagcttatagctgatgactgatagctgatagcttatag 36985960  T
Q  209 ctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  36985961 ctgaaaat-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 36986012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 10034460 - 10034355
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| ||||||||  || || |||||| |||| || ||||| ||||||||||||||||||| ||  || ||||||||||||||||||| |||||||||     
T  10034460 ctgatagctgaaaagctagctgatagctgatgactgatagctaatagtttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagt 10034362  T
Q  255 tgttgaa 261  Q
    |||||||    
T  10034361 tgttgaa 10034355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7455317 - 7455246
Alignment:
Q  189 tggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  7455317 tggtagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 7455246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 15264784 - 15264866
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||| |||||||||||||   || || |||||||||||| |||||||||||||||| |||||||    
T  15264784 tagctgatgactgatagctgatagcttatagctgaaaagt-tcgcttattaaaaataatatgtttgataaaattagctgttgaa 15264866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 239973 - 240027
Alignment:
Q  194 gctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    |||||||| |||||||||||||| ||| || ||||||| ||||||||||||||||    
T  239973 gctgatagcttatagctgaaaaagctcgcttattaaaattaatgtgtttgataaa 240027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 36935371 - 36935436
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||| ||||||||  || ||||||||||||||||||| ||||||||| |||||||    
T  36935371 ctgatagcttatagct-aaaaaacttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 36935436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 15264712 - 15264759
Alignment:
Q  104 ttaacgctctatttggtaaaaataagtcataagctagcttatagctga 151  Q
    |||| ||||| |||||||||||||||| ||||||||||| ||||||||    
T  15264712 ttaaggctctgtttggtaaaaataagttataagctagctgatagctga 15264759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 38325193 - 38325044
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatga-----ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtt 203  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||| |     ||||| ||||||||  || || |||||| |||| || ||||||||||      
T  38325193 gctctgtttggtaaaaataagctataagctagctgatagctgataagctagctgatagctgaaaagctagctgatagctgatgactgatagctgatag-- 38325096  T
Q  204 tatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
         |||||||  || ||| ||||||||||||||||||| ||||||||| |||||||    
T  38325095 -----ctgaaaag-cttacttattaaaaataatgtgtttggtaaaattagctgttgaa 38325044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 5774953 - 5774808
Alignment:
Q  120 taaaaataagtcataagctagcttatagctgatga-----ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaa 214  Q
    ||||||||||  ||||||||||| ||||||||| |     ||||| ||||||||  || || ||||||  ||| || ||||| |||| | ||||||||||    
T  5774953 taaaaataagctataagctagctgatagctgataaattagctgatagctgaaaagctagctgatagctggtgactgatagctaatagctgatagctgaaa 5774854  T
Q  215 aaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  5774853 ag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 5774808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 16495896 - 16495961
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  16495896 ctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 16495961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 1875291 - 1875359
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| | |||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  1875291 tagctgatagctgatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 1875359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 6221954 - 6221991
Alignment:
Q  174 cttatagctaatgattggtagctgatagtttatagctg 211  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  6221954 cttatagctgatgattgatagctgatagtttatagctg 6221991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 30524491 - 30524442
Alignment:
Q  116 ttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||||||||||||  ||||||||||| ||||||| |||||||| |||||    
T  30524491 ttggtaaaaataagctataagctagctgatagctggtgactgatagctga 30524442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 8876427 - 8876391
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  8876427 attaaaaataatgtgtttggtaaaattagttgttgaa 8876391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 11447905 - 11447861
Alignment:
Q  134 aagctagcttatagctgatgactgatggctgaaaaattaacttat 178  Q
    |||||||||||||||||||| ||||| |||||||| ||| |||||    
T  11447905 aagctagcttatagctgatggctgatagctgaaaagttagcttat 11447861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 42520552 - 42520516
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  42520552 attaaaaataatgtgtttggtaaaattagctgttgaa 42520516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 317861 - 317965
Alignment:
Q  156 tgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggt 255  Q
    |||| ||||||||| ||  |||||| | |||| || ||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||  |    
T  317861 tgatagctgaaaaactagtttatagttgatgactgatagttgatagcttatagctgaaaa-actcacttattaaaaataatgtgtttgataaaattaatt 317959  T
Q  256 gttgaa 261  Q
    ||||||    
T  317960 gttgaa 317965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 2942920 - 2943027
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| ||||||||  || ||||||||| |||| || |||||||||| ||| |||||||||| ||  || ||||||||||||||||||| |||||||||     
T  2942920 ctgatagctgaaaagctagcttatagctgatgactgatagctgatagcttacagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagc 2943018  T
Q  255 tgttgaaat 263  Q
    |||||||||    
T  2943019 tgttgaaat 2943027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 55900371 - 55900457
Alignment:
Q  174 cttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||| |||| |  |||||||||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| || |||||||    
T  55900371 cttatagctgatgactaatagctgatagcttatagctgaaaaat-tcacttattaaaaataatgtgtttggtaaaatgagttgttgaa 55900457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 6245078 - 6245009
Alignment:
Q  191 gtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  6245078 gtagctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 6245009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 37113631 - 37113735
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| |||||||| ||| || |||||| |||| || ||| |||||| |||||||||||||  ||  || ||||||||||||||||||| |||||||||     
T  37113631 ctgatagctgaaaagttagctgatagctgatgactgatagttgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattaga 37113729  T
Q  255 tgttga 260  Q
    ||||||    
T  37113730 tgttga 37113735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 40675482 - 40675394
Alignment:
Q  163 tgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaatta 252  Q
    ||||||| || ||||||||| |||| || ||||||||||||| ||| || |||||||  || ||||||||||||||||||| ||||||||    
T  40675482 tgaaaaactagcttatagctgatgactgatagctgatagtttgtagttg-aaaaacttgcttattaaaaataatgtgtttggtaaaatta 40675394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 19802677 - 19802621
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||||||||| |||||    
T  19802677 gctctgtttggtaaaaataagctataagctagctgatagctgatgactgatagctga 19802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 39839423 - 39839506
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  39839423 atagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 39839506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 54999400 - 54999482
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||  |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  54999400 tagctgatgactgatagctgatatcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 54999482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 32013173 - 32013108
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    ||||||||||||||||||||||||  ||  || ||||||||||||||||||| ||||||||| ||||    
T  32013173 tagctgatagtttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgtt 32013108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 19801139 - 19801207
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  19801139 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 19801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 39839395 - 39839444
Alignment:
Q  116 ttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    ||||||||||||||  ||||||||||| |||||||||||||||| |||||    
T  39839395 ttggtaaaaataagctataagctagctgatagctgatgactgatagctga 39839444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 53284787 - 53284719
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  53284787 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 53284719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 19802642 - 19802559
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || ||||||||| |||| |||||||||  || ||| |||||||||||||| |||| ||||||||| |||||||    
T  19802642 atagctgatgactgatagctgatattttaaagctgaaaag-cttacttattaaaaataatgtctttggtaaaattagttgttgaa 19802559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 36180663 - 36180746
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || || |||||||||||||||||||||   |  || ||||||||||||||||||| ||||||||| |||||||    
T  36180663 atagctgatgactgataactgatagtttatagctgaaaagtttg-cttattaaaaataatgtgtttggtaaaattagttgttgaa 36180746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 53443825 - 53443777
Alignment:
Q  103 attaacgctctatttggtaaaaataagtcataagctagcttatagctga 151  Q
    ||||| ||||| ||||||||||| |||||||||||||||| ||||||||    
T  53443825 attaaagctctgtttggtaaaaagaagtcataagctagctgatagctga 53443777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 33984878 - 33984808
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    |||| ||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||||    
T  33984878 tagcggatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaaat 33984808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 43375471 - 43375416
Alignment:
Q  110 ctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctga 165  Q
    |||| |||||||||||||||  ||||||||||| ||||||| |||||||| |||||    
T  43375471 ctctgtttggtaaaaataagctataagctagctgatagctggtgactgatagctga 43375416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 43375422 - 43375353
Alignment:
Q  192 tagctgatagtttat-agctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||| |||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  43375422 tagctgatagcttattagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 43375353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 44449214 - 44449176
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  44449214 attaaaaataatgtgtttggtaaaattagctgttgaaat 44449176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 55345481 - 55345400
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttga 260  Q
    ||||| |||| || ||| |||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| ||||||    
T  55345481 tagctgatgactgatagttgatagcttatagctgaaaat-cttgcttattaaaaataatgtgtttggtaaaattagctgttga 55345400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 30649904 - 30649956
Alignment:
Q  199 tagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaatta 252  Q
    |||||||||||||||||| ||  || |||||||||||||| |||||||||||||    
T  30649904 tagtttatagctgaaaaa-ctttcttattaaaaataatgtatttgataaaatta 30649956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 47633165 - 47633233
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| || |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  47633165 tagctgacagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 47633233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 48057972 - 48058036
Alignment:
Q  196 tgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||||||| |||||| |  || ||||||||||||||||||||||||||||  |||||||    
T  48057972 tgatagcttatagct-aaaaaatttgcttattaaaaataatgtgtttgataaaattaactgttgaa 48058036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 49334497 - 49334565
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||   |  || ||||||||||||||||||| ||||||||| |||||||    
T  49334497 tagctgatagcttatagctgaaaagtttg-cttattaaaaataatgtgtttggtaaaattagctgttgaa 49334565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 31220719 - 31220671
Alignment:
Q  213 aaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||| || |||||||||||| |||||| ||||||||| |||||||    
T  31220719 aaaaactcgcttattaaaaataatatgtttggtaaaattagttgttgaa 31220671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 45559988 - 45560024
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  45559988 attaaaaataatgtgtttggtaaaattagttgttgaa 45560024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 12131297 - 12131214
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||   | ||||||||||||||||||| ||||||||| |||||||    
T  12131297 atagctgatgattgatagctgatagtttatagctgaaaaa-cttgtttattaaaaataatgtgtttggtaaaattagttgttgaa 12131214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 24118501 - 24118569
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  24118501 tagctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 24118569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 22708114 - 22708032
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  22708114 tagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 22708032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 18368902 - 18368970
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  18368902 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 18368970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 20646475 - 20646407
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || |||||||||||||| |||||||||||||| |||||||    
T  20646475 tagctgatagcttatagctgaaaagcctg-cttattaaaaataatgtatttgataaaattagctgttgaa 20646407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 32986252 - 32986320
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||||||||  ||  || ||||||||||| ||||||| ||||||||| |||||||    
T  32986252 tagctgatagtttatagctgaaaag-cttgcttattaaaaataacgtgtttggtaaaattagttgttgaa 32986320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 5957067 - 5957010
Alignment:
Q  203 ttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||||||  ||||||  |||||||||||||||||| ||||||||| |||||||    
T  5957067 ttatagctgaaaat-ctcactttttaaaaataatgtgtttggtaaaattagttgttgaa 5957010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 14856315 - 14856217
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    ||||| ||||||||  || |||||| || |||| || |||||| ||| |||||||||||||||||  || ||||||| ||| ||||||| |||| ||||    
T  14856315 ctgatagctgaaaagctagcttataacttatgactgatagctggtagcttatagctgaaaaaactagcttattaaaattaaagtgtttggtaaagttag 14856217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 13755642 - 13755678
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  13755642 attaaaaataatgtgtttggtaaaattagatgttgaa 13755678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 25022296 - 25022332
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25022296 attaaaaataatgtgtttggtaaaattagttgttgaa 25022332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 261
Target Start/End: Complemental strand, 5839120 - 5838976
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatag 208  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||        |||||||| ||| || |||||| |||| || |||||||||  ||||||    
T  5839120 gctctgtttggtaaaaataagctataagctagctgatagctgata-------gctgaaaagttagctgatagctgatgactgatagctgataacttatag 5839028  T
Q  209 ctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  5839027 ctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 5838976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 14912582 - 14912477
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattagg 254  Q
    ||||| |||||||| ||| || |||||| |||| || |||||||||| |||||| ||||||  ||  || ||||||||||||||||||| |||||||||     
T  14912582 ctgatagctgaaaagttagctgatagctgatgactgatagctgatagcttatagttgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagc 14912484  T
Q  255 tgttgaa 261  Q
    |||||||    
T  14912483 tgttgaa 14912477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 22215898 - 22215830
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  22215898 tagctgatagtttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 22215830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 43800095 - 43800166
Alignment:
Q  189 tggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  43800095 tggtagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 43800166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 31719526 - 31719463
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttat 178  Q
    |||||||||| ||||  |||||||||||||||||||||| ||||| |||||||| ||| |||||    
T  31719526 tttggtaaaattaagctataagctagcttatagctgatggctgatagctgaaaagttagcttat 31719463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 5964634 - 5964695
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaa 216  Q
    ||||| |||||||| ||| ||||||||| |||| |||||||||| || ||||||||||||||    
T  5964634 ctgatagctgaaaagttagcttatagctgatgactggtagctgaaagcttatagctgaaaaa 5964695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 38745400 - 38745468
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  38745400 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 38745468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 40530279 - 40530211
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  40530279 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 40530211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4023202 - 4023126
Alignment:
Q  1 gagatgattggacttgagaaaaagcaagacaacttgaccatttcctactcagggaagccacaatcttgaaggttaag 77  Q
    |||||| ||||| ||| |||| |||| || ||||| ||||||||||| |||||||| |||| || ||||||||||||    
T  4023202 gagatggttggagttgggaaagagcatgataacttaaccatttcctaatcagggaatccacgattttgaaggttaag 4023126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 34900176 - 34900219
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgat 152  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||    
T  34900176 gctctatttggtaaaaataagttataagttagctgatagctgat 34900219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 35252456 - 35252519
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaaattaacttat 178  Q
    ||||||||||| |||  ||||||||||||||| |||||| ||||| |||||||| ||| |||||    
T  35252456 tttggtaaaaacaagctataagctagcttataactgatggctgatagctgaaaagttagcttat 35252519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 3153715 - 3153757
Alignment:
Q  117 tggtaaaaataagtcataagctagcttatagctgatgactgat 159  Q
    |||||||||||||| ||||||||||| || |||||||||||||    
T  3153715 tggtaaaaataagttataagctagctgatggctgatgactgat 3153757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 9339858 - 9339896
Alignment:
Q  174 cttatagctaatgattggtagctgatagtttatagctga 212  Q
    |||||||||||||| || |||||||||||||||||||||    
T  9339858 cttatagctaatgactgatagctgatagtttatagctga 9339896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 25099531 - 25099600
Alignment:
Q  191 gtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||| |||||||||||||  ||   | ||||||||||||||||||| ||||||||| |||||||    
T  25099531 gtagctgatagcttatagctgaaaag-cttgtttattaaaaataatgtgtttggtaaaattagctgttgaa 25099600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 41669644 - 41669579
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||| ||||||| ||| || ||||||||||||||||||| ||||||||  |||||||    
T  41669644 ctgatagcttatagttgaaaaa-ctcgcttattaaaaataatgtgtttggtaaaattaattgttgaa 41669579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 42353122 - 42353176
Alignment:
Q  194 gctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaa 248  Q
    |||||||| |||||||||||||| ||| || ||||||| ||||||||||| ||||    
T  42353122 gctgatagcttatagctgaaaaagctcgcttattaaaattaatgtgtttggtaaa 42353176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 14912621 - 14912572
Alignment:
Q  102 tattaacgctctatttggtaaaaataagtcataagctagcttatagctga 151  Q
    |||||| ||||| |||||||||||||||  ||||||||||| ||||||||    
T  14912621 tattaaggctctgtttggtaaaaataagctataagctagctgatagctga 14912572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 35397331 - 35397399
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||| ||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  35397331 tagctgatagcttatagttgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 35397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 39734809 - 39734741
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||  || |||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  39734809 tagctgatgattgatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 39734741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 17123415 - 17123379
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  17123415 attaaaaataatgtgtttggtaaaattagttgttgaa 17123379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 20696690 - 20696726
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  20696690 attaaaaataatgtgtttggtaaaattagctgttgaa 20696726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 35159597 - 35159633
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  35159597 attaaaaataatgtgtttggtaaaattagttgttgaa 35159633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 28957438 - 28957502
Alignment:
Q  196 tgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  28957438 tgatagtttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 28957502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 42327427 - 42327498
Alignment:
Q  189 tggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  42327427 tggtagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 42327498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 43338457 - 43338375
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  43338457 tagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 43338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 44571580 - 44571474
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaa-ataatgtgtttgataaaattag 253  Q
    ||||| ||||||||  |||||||||||| ||| ||| |||||||||| |||||||| |||||| | ||| ||||||| | || ||||||| |||||||||    
T  44571580 ctgatagctgaaaagctaacttatagctgatggttgatagctgatagcttatagct-aaaaaattaacttattaaaataaaaagtgtttggtaaaattag 44571482  T
Q  254 gtgttgaa 261  Q
     |||||||    
T  44571481 ctgttgaa 44571474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 982323 - 982258
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    |||||||||| |||||||||||||| ||| || | ||||||||||||||||| ||||||||| ||||    
T  982323 tagctgatagcttatagctgaaaaa-ctcgcttaataaaaataatgtgtttggtaaaattagatgtt 982258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 31029863 - 31029917
Alignment:
Q  161 gctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaa 215  Q
    ||||||||  ||||||||| || ||||||| ||||||||||||||||||||||||    
T  31029863 gctgaaaagctaacttataactgatgattgatagctgatagtttatagctgaaaa 31029917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 43002694 - 43002652
Alignment:
Q  110 ctctatttggtaaaaataagtcataagctagcttatagctgat 152  Q
    |||||||||||||||| |||||||||||||||| |||||||||    
T  43002694 ctctatttggtaaaaagaagtcataagctagctgatagctgat 43002652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 46350122 - 46350187
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||||||||||||| |||||||    
T  46350122 ctgatagcttatagctgaaaagcctg-cttattaaaaataatgtgtttgataaaattagctgttgaa 46350187  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 48312787 - 48312837
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgatgactgat 159  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||||||||||    
T  48312787 gctctgtttggtaaaaataagctataagctagctgatagctgatgactgat 48312837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 28493548 - 28493616
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  28493548 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 28493616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 42327031 - 42327098
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaaat 263  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||||||||||||  |||||||||    
T  42327031 ctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttgataaaattaactgttgaaat 42327098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 48312822 - 48312905
Alignment:
Q  177 atagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||| |||| || ||||| |||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  48312822 atagctgatgactgatagctaatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 48312905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 19756656 - 19756691
Alignment:
Q  130 tcataagctagcttatagctgatgactgatggctga 165  Q
    |||||||||||||||||||||||||||||| |||||    
T  19756656 tcataagctagcttatagctgatgactgatagctga 19756691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 29993359 - 29993441
Alignment:
Q  178 tagctaatgattggtagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||| |||| || |||||||||| |||||||||||||  ||  || |||||||||||||| |||| ||||||||| |||||||    
T  29993359 tagctgatgactgatagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtctttggtaaaattagctgttgaa 29993441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 35648193 - 35648131
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgtt 258  Q
    ||||||| |||||||||||||| ||  || ||||||||||||||||||| ||||||||| ||||    
T  35648193 ctgatagcttatagctgaaaaa-cttgcttattaaaaataatgtgtttggtaaaattagctgtt 35648131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 43158140 - 43158097
Alignment:
Q  109 gctctatttggtaaaaataagtcataagctagcttatagctgat 152  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||    
T  43158140 gctctgtttggtaaaaataagttataagctagctaatagctgat 43158097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 21442107 - 21442141
Alignment:
Q  134 aagctagcttatagctgatgactgatggctgaaaa 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  21442107 aagctagcttatagctgatgactgatagctgaaaa 21442141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 28236022 - 28235988
Alignment:
Q  134 aagctagcttatagctgatgactgatggctgaaaa 168  Q
    |||||||||||||||||||||||||| ||||||||    
T  28236022 aagctagcttatagctgatgactgatagctgaaaa 28235988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 42980352 - 42980406
Alignment:
Q  161 gctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaa 215  Q
    |||||||| ||||||||||||| |||| || ||| |||||| |||||||||||||    
T  42980352 gctgaaaagttaacttatagctgatgactgatagttgatagcttatagctgaaaa 42980406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 46536902 - 46536837
Alignment:
Q  195 ctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  46536902 ctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 46536837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 48936004 - 48935966
Alignment:
Q  134 aagctagcttatagctgatgactgatggctgaaaaatta 172  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  48936004 aagctagcttatagctggtgattgatggctgaaaaatta 48935966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 6244656 - 6244588
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||  |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  6244656 tagctgatatcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagctgttgaa 6244588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 31226208 - 31226276
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||   |  || ||||||||||||||||||| ||||||||| |||||||    
T  31226208 tagctgatagcttatagctgaaaagtttg-cttattaaaaataatgtgtttggtaaaattagttgttgaa 31226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 36821420 - 36821352
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||| | ||||||| | || |||||||||||||| |||  ||||||||| |||||||    
T  36821420 tagctgatagtttatagttaaaaaaac-cgcttattaaaaataatgtatttagtaaaattagttgttgaa 36821352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 39708624 - 39708677
Alignment:
Q  115 tttggtaaaaataagtcataagctagcttatagctgatgactgatggctgaaaa 168  Q
    |||||||||| ||||  |||||||||||||||| ||||| ||||| ||||||||    
T  39708624 tttggtaaaattaagcaataagctagcttatagttgatggctgatagctgaaaa 39708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 43158066 - 43157998
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||  |||||||| ||||| ||  || ||||||||||||||||||| ||||||||| |||||||    
T  43158066 tagctgataacttatagct-aaaaagcttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 43157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 4061385 - 4061349
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  4061385 attaaaaataatgtgtttggtaaaattagctgttgaa 4061349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 27827507 - 27827471
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  27827507 attaaaaataatgtgtttggtaaaattagctgttgaa 27827471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 30583357 - 30583297
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaa 215  Q
    ||||| ||||||||  || ||||||||| ||| ||| |||||||||| |||||||||||||    
T  30583357 ctgatagctgaaaagctagcttatagctgatggttgatagctgatagcttatagctgaaaa 30583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 31031307 - 31031343
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  31031307 attaaaaataatgtgtttggtaaaattagttgttgaa 31031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 34821414 - 34821462
Alignment:
Q  213 aaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||| ||||||  |||||||||||||||||| ||||||||| |||||||    
T  34821414 aaaagctcactttttaaaaataatgtgtttggtaaaattagttgttgaa 34821462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 42328371 - 42328407
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  42328371 attaaaaataatgtgtttggtaaaattagttgttgaa 42328407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 46350036 - 46350084
Alignment:
Q  104 ttaacgctctatttggtaaaaataagtcataagctagcttatagctgat 152  Q
    |||| ||||| |||||||||||||||  ||||||||||| |||||||||    
T  46350036 ttaaggctctgtttggtaaaaataagctataagctagctgatagctgat 46350084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 46614980 - 46615016
Alignment:
Q  225 attaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  46614980 attaaaaataatgtgtttggtaaaattagctgttgaa 46615016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 7801 - 7733
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  7801 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 7733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 5448 - 5388
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattag 253  Q
    |||||||||| |||||||||||||  ||  || ||||||||||||||||||| |||||||||    
T  5448 tagctgatagcttatagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattag 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 19155 - 19087
Alignment:
Q  192 tagctgatagtttatagctgaaaaaactcactcattaaaaataatgtgtttgataaaattaggtgttgaa 261  Q
    |||||||||| ||| |||||||||  ||  || ||||||||||||||||||| ||||||||| |||||||    
T  19155 tagctgatagcttaaagctgaaaag-cttgcttattaaaaataatgtgtttggtaaaattagttgttgaa 19087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 76983 - 76922
Alignment:
Q  155 ctgatggctgaaaaattaacttatagctaatgattggtagctgatagtttatagctgaaaaa 216  Q
    ||||| ||||||||| |  ||||||||| |||| || |||||||||| ||||||||||||||    
T  76983 ctgatagctgaaaaactcgcttatagctgatgactgatagctgatagcttatagctgaaaaa 76922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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