View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_34 (Length: 258)
Name: NF16054_low_34
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 6013691 - 6013933
Alignment:
| Q |
16 |
aaaatgtcagtggttagattaaaacctctatccggattcgatcataaaaaattctctccaaactagtagtctttgttaaaccccgttggttgttaaaatt |
115 |
Q |
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| T |
6013691 |
aaaatgtcactggttagattaaaacctctatccgaattcgatcagaaaaaattatctccaaactagtagtctttgttaaaccccgttggttgttaaaatt |
6013790 |
T |
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| Q |
116 |
ttgggtttatttgttgattccttagtttggttccttaaacttaaaccttattttttgaggtaattcaatttcctcagttgcctgccacttcgtgtgttct |
215 |
Q |
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| T |
6013791 |
ttgggtttatttgttgattccttagtttggttccttaaacttaaaccttattttttgaggtaattcaatttcctctgttgcctgccacttcgtgtgttct |
6013890 |
T |
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| Q |
216 |
gaaacagagcagctgacacaaatgaacgtatcttcaaaacttt |
258 |
Q |
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| T |
6013891 |
gaaacagagcaactgacacaaatgaacgtatcttcaaaacttt |
6013933 |
T |
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