View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_35 (Length: 255)
Name: NF16054_low_35
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 14001232 - 14001017
Alignment:
| Q |
17 |
atgcatgacatatgacatatcacgacttgacaatatagtttaaatgtaacaaaaatcaatcactagcaatgatgaaaacatgcaagatgaaatttttaag |
116 |
Q |
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| T |
14001232 |
atgcataacatatgacatatcacgacttgacaatatagtttaaatgtaacaaaaatcaatcactagcaatgatgaaaacatgcaagatgaaatttttaag |
14001133 |
T |
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| Q |
117 |
gaatcaaacagcaatgatatagcatcattcttattacaaaaaagtatgaacaaaacatcttctcatactccccactctgcagtttaacaacctcctcctt |
216 |
Q |
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| T |
14001132 |
gaatcaaacagcaatgatatagcatcattcttattac--------------aaaacatcttctcatactccccactctgcagtttaacaacctcctcctt |
14001047 |
T |
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| Q |
217 |
aaacatcctattaacctgatcaatattctt |
246 |
Q |
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| T |
14001046 |
aaacatcctatcaacctgatcaatattctt |
14001017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 1472209 - 1472135
Alignment:
| Q |
174 |
tcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctattaacctgatcaatattcttcg |
248 |
Q |
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| T |
1472209 |
tcttctcatgctccccgctctgcgtcttaacaacctccttcttaagcatcataacaacctgatcaatattcttcg |
1472135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 1473263 - 1473234
Alignment:
| Q |
72 |
tcaatcactagcaatgatgaaaacatgcaa |
101 |
Q |
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| T |
1473263 |
tcaatcactagcaatgatgaaaacatgcaa |
1473234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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