View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_36 (Length: 255)
Name: NF16054_low_36
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 10725198 - 10724970
Alignment:
| Q |
17 |
gtggagaagtagaagagtctctgtttaagaaatttgaaaaacagtcaaattggagtttgagaaacctcgtacaagaaactgaccaacctgaagtaagttc |
116 |
Q |
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| T |
10725198 |
gtggagaagtagaagagtctctgtttaagaaatttgaaaaacagtcaaattggagtttgagaaacctcgtacaagaaactgaccaacctgaagtaagtgc |
10725099 |
T |
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| Q |
117 |
tactactgcattgactaatatctttctctcaaaatccagctttagtttaattatgtagtcattgagcatttaaattacaaaatgaattttaatctatgta |
216 |
Q |
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| T |
10725098 |
tactactgctttgactaatatctttctctcaaaatccagctttagtttaattatgtagtcattgagcatttaaattacaaaatgaattttaatctatgta |
10724999 |
T |
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| Q |
217 |
gcaccgacatttcagatcaaaggtgtgtt |
245 |
Q |
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| T |
10724998 |
gcaccaacatttcagatcaaaggtgtgtt |
10724970 |
T |
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Back To:
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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 10730457 - 10730573
Alignment:
| Q |
127 |
ttgactaatatctttctctcaaaatccagctttagtttaattat----gtagtcattgagcatttaaattacaaaatgaattttaatctatgtagcaccg |
222 |
Q |
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| T |
10730457 |
ttgactaatatttttctattaaaatccagctttagttttattatatacgtagtcattgaacatttaaattacaaaataaattttaatatacatagcacca |
10730556 |
T |
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| Q |
223 |
aca-tttcagatcaaag |
238 |
Q |
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| T |
10730557 |
acactttcagatcaaag |
10730573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 16199219 - 16199265
Alignment:
| Q |
209 |
tctatgtagcaccgacatttcagatcaaaggtgtgtttggtgtctgt |
255 |
Q |
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| T |
16199219 |
tctatgtagcaccgacatttctgatcaaaggcttgtttggtgtctgt |
16199265 |
T |
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