View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_39 (Length: 246)
Name: NF16054_low_39
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43133240 - 43133011
Alignment:
| Q |
1 |
tcatcatctttccctttgaagggacttgtaaagtattgtagtgacaaatttgtgttgaaacctatgagttgatcttagtgttacaaattgatcaccatca |
100 |
Q |
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| T |
43133240 |
tcatcatctttccctttgaagggacttgtaaagtattgtagtgacaaatttgtgttgaaacctatgagttgatcttagtgttacaaattgatcaccatca |
43133141 |
T |
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| Q |
101 |
gatttgttgatgtatagatgatttagatccacatgtgtagaactagggacttgatcaatattgcttgttgaagcctcttcttgtgttattgtcactggta |
200 |
Q |
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| T |
43133140 |
gatttgttgatgtatagatgatttagatccacatgtgtagaactagggacttgatcaatattgcttgttgaagcctcttcttgtgttattgtcactggta |
43133041 |
T |
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| Q |
201 |
tttgtggtggtaattctgggggaggcttgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43133040 |
tttgtggtggtaattctgggggaggcttgt |
43133011 |
T |
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