View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_4 (Length: 591)
Name: NF16054_low_4
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Complemental strand, 37498013 - 37497457
Alignment:
| Q |
16 |
acataagagtagcatagatatgattgtagttggaaataaacaatgaaaatgttatttgaatgaccaatgcctatccactagcccactcacgactgcaatt |
115 |
Q |
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| T |
37498013 |
acataagagtagcatagatatgattgtagttggaaataaacaatgaaaatgttatttgaatgaccaatgcctatccactagcccactcacgactgcaatt |
37497914 |
T |
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| Q |
116 |
tgggttacaacatcaaggttttaatatctctggctgcgaattagaccttatcagccacatttgacagcaattctctacaatatcaatgatcgcaacagaa |
215 |
Q |
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| T |
37497913 |
tgggttacaacatcaaggttttaatatctctggctgcgaattagaccttatcagccacatttgacagcaattctctacaatatcaatgatcgcaacagaa |
37497814 |
T |
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| Q |
216 |
gccacaatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaag |
315 |
Q |
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| T |
37497813 |
accacaatgaaaatcttagttgagccctagtatcaattttctccctccaaatttcttttatgaaaaatttgcacagtagttacagtttgcatagcgcaag |
37497714 |
T |
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| Q |
316 |
aggcacaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgnnnnnnnggagttatttttattgggtgtagggagag |
415 |
Q |
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| T |
37497713 |
cggcacaaaaaacatgcattcaagacacattttttgtccataatttaatttcagtatacaattgaaaaaaagaagttatctttatt-------------g |
37497627 |
T |
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| Q |
416 |
ggtgtaaaaattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagatacttgcctctttcagtggatctaacatac |
515 |
Q |
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| T |
37497626 |
ggtgtaaaaattaaagaatgataattataaaatcaaagttcattgataaagtagtattgtagaatgcagataattgcctctttcagtggatctaacatac |
37497527 |
T |
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| Q |
516 |
tcaaagaccaagnnnnnnncagactgagccagtgtatataaccaagagtacactttctcttcttcctttg |
585 |
Q |
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| T |
37497526 |
tcaaagaccaagtttttttcagactgagccagtgtatataaccaagagtacactttctcttcttcctttg |
37497457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 32618729 - 32618778
Alignment:
| Q |
162 |
cttatcagccacatttgacagcaattctctacaatatcaatgatcgcaac |
211 |
Q |
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| T |
32618729 |
cttatcagccgcatttgactgcaatactctacaatatcaaatatcgcaac |
32618778 |
T |
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