View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_43 (Length: 240)
Name: NF16054_low_43
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 40093790 - 40093978
Alignment:
| Q |
20 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacctttta |
119 |
Q |
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| T |
40093790 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggacctttta |
40093889 |
T |
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| Q |
120 |
ctcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagtttaaacatgag |
208 |
Q |
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| T |
40093890 |
ctcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagtttaaacatgag |
40093978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 40063159 - 40063346
Alignment:
| Q |
20 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacctttta |
119 |
Q |
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| T |
40063159 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacctttta |
40063258 |
T |
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| Q |
120 |
ctcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagtttaaacatga |
207 |
Q |
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| T |
40063259 |
ctcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaaaaagagtttaaacatga |
40063346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 40081510 - 40081694
Alignment:
| Q |
20 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggacctttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| || |
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| T |
40081510 |
gaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactcatgcaactatagaggaccttata |
40081609 |
T |
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| Q |
120 |
ctcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagtttaaaca |
204 |
Q |
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| T |
40081610 |
cttcatctaaatgtcgcaagaactgtggaaaaccgtcacagacattgtaagtgttgcaaattttcaataaaaaaaagtttaaaca |
40081694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 22012684 - 22012538
Alignment:
| Q |
23 |
gcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactc |
122 |
Q |
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|||||||| || ||||| |||||||||||||||||||| ||||| | || | ||| | | || || ||||||||||| || |||||| | | | || |
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| T |
22012684 |
gcttgggtgaacggacagagcattgggcgatactggccaacatacatctctccgaattctggctgtactgactcatgcaattatagaggaacatattctg |
22012585 |
T |
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| Q |
123 |
aaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaa |
169 |
Q |
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| T |
22012584 |
catccaaatgcctcaagaattgtggaaaaccatcacagacattgtaa |
22012538 |
T |
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