View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_48 (Length: 236)
Name: NF16054_low_48
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29643840 - 29644060
Alignment:
| Q |
1 |
ctgcatcagctgctggaacaatcatggtacttctcttcctatgtttgtatgcaccgtcatataaaacatttttacacatgcattcaatcaaatcttccca |
100 |
Q |
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| T |
29643840 |
ctgcatcagctgctggaacaatcatggtacttctcttcctatgtttgtatgcaccgtcatataaaacatttttacacatgcattcaatcaaatcttccca |
29643939 |
T |
|
| Q |
101 |
tgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagtataatttgattcaatgcatgtggaaacaagttttgcatagcacag |
200 |
Q |
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| T |
29643940 |
tgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagtgtaatttgattgtatgcatgtggaaacaagttttgcataacaccg |
29644039 |
T |
|
| Q |
201 |
tatttggaaaaacattaaaat |
221 |
Q |
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||||||||||||||| ||||| |
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| T |
29644040 |
tatttggaaaaacatgaaaat |
29644060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 1634996 - 1635028
Alignment:
| Q |
62 |
taaaacatttttacacatgcattcaatcaaatc |
94 |
Q |
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| T |
1634996 |
taaaacatttttacacatgcatccaatcaaatc |
1635028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 9685161 - 9685089
Alignment:
| Q |
62 |
taaaacatttttacacatgcattcaatcaaatcttcccatgtagatatttgcggagatgttttagaaactaac |
134 |
Q |
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| T |
9685161 |
taaaacttttctacacatgcattcaatcaaatcaagatatgtagatatttctggagatattttagaaactaac |
9685089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 41250989 - 41250904
Alignment:
| Q |
70 |
ttttacacatgcattcaatcaaatcttcccatgtagatatttgcggagatgttttagaaactaacaaaacaaagtgacatcatagt |
155 |
Q |
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|||||||||| |||||||||| || | |||| ||||||| | |||||||| ||| ||||||||||||||| |||||| ||||| |
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| T |
41250989 |
ttttacacatacattcaatcacatttcaccatacagatattcgtggagatgtattaagaactaacaaaacaaattgacattatagt |
41250904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 36960457 - 36960425
Alignment:
| Q |
63 |
aaaacatttttacacatgcattcaatcaaatct |
95 |
Q |
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| T |
36960457 |
aaaacatttttacacatgcatttaatcaaatct |
36960425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 35442400 - 35442436
Alignment:
| Q |
58 |
catataaaacatttttacacatgcattcaatcaaatc |
94 |
Q |
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| T |
35442400 |
catataaaatatttttacacatgcaatcaatcaaatc |
35442436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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