View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_49 (Length: 231)
Name: NF16054_low_49
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 270161 - 270004
Alignment:
| Q |
25 |
gtgaaatcaaggaatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaacggctcatacaatt |
124 |
Q |
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| T |
270161 |
gtgaaatcaaggaatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaacggctcatacaatt |
270062 |
T |
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| Q |
125 |
ta--------aaattcttaaacctatatgatgaatcccttatacaaaactctctaggc |
174 |
Q |
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| T |
270061 |
aaattaaaacaaattcttaaacctatatgatgaatcccttatacaaaactctttaggc |
270004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 49250340 - 49250427
Alignment:
| Q |
24 |
tgtgaaatcaa-ggaatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaac |
111 |
Q |
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| T |
49250340 |
tgtgaaatcaaaggaatttgataacaaagtaacttcatttca-tcatactcttcaatttgaattttttacatgtggtcaactttacaac |
49250427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 14945436 - 14945492
Alignment:
| Q |
37 |
aatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttaca |
93 |
Q |
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| T |
14945436 |
aatttgaatacaaagtaacttcatttcatcgatactcttcaatttgaatattttaca |
14945492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 8791088 - 8791021
Alignment:
| Q |
44 |
taacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaac |
111 |
Q |
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| T |
8791088 |
taacaaagtaatttcatttgattgatactcctcaatttgaatattttatatgtggtaaactttacaac |
8791021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 6205814 - 6205772
Alignment:
| Q |
69 |
tactcctcaatttgaatattttacatgtgttcaactttacaac |
111 |
Q |
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| T |
6205814 |
tactcttcaatttgaatgttttacatgtggtcaactttacaac |
6205772 |
T |
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