View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_50 (Length: 228)
Name: NF16054_low_50
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 41079114 - 41079311
Alignment:
| Q |
17 |
atattcatttacttctcttttcttttatcaaactcactctattttataaacaaacaaacaaactactttgtcagcaagttttcttcattcattttccaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41079114 |
atattcatttacttctcttttcttttatcaaactcactctattttataaacaaataaacaaactactttgtcaccaagttttcttcattcattttccaaa |
41079213 |
T |
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| Q |
117 |
cagaaatccaacaatatcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatct |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079214 |
cagaaatccaacaatgtcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttatagatttcatct |
41079311 |
T |
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