View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_7 (Length: 510)
Name: NF16054_low_7
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 15 - 487
Target Start/End: Original strand, 26332034 - 26332506
Alignment:
| Q |
15 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctactagccgaggcacaataaccctcattttcattatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332034 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctactagccgaggcacaataaccctcattttcattatc |
26332133 |
T |
|
| Q |
115 |
acccttcctgcaacaaagaaaaatcacaattagttcgactaaattaaaatgcactacacaattccactctaaaatcatgaatggcgtattagaccttaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
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| T |
26332134 |
acccttcctgcaacaaagaaaaatcacaattagttcgactaaattaaaatgcactacacaattccactctaaaatcatgaatgacgtattaaataggaaa |
26332233 |
T |
|
| Q |
215 |
ttgctaatatcttaccatcttttcgcctctggtacaagggcattgtcatttcctccagaataactagtttgtgatgtttgttcaaattcttcttctccca |
314 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332234 |
ttgcttatatcttaccatcttttcgcctctggtacaagggcattgtcatttcctccagaataactagtttgtgatgtttgttcaaattcttcttctccca |
26332333 |
T |
|
| Q |
315 |
cagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatccgaaattccggagttagtgcatgatgaagtaggttgagagtttgttct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26332334 |
cagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatccgaaattccggagttagtgcatgatgaagtaggttgagagtttgttct |
26332433 |
T |
|
| Q |
415 |
tctattagactgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatcc |
487 |
Q |
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| T |
26332434 |
tctattagactgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatccaaatcc |
26332506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 3669877 - 3669812
Alignment:
| Q |
15 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctac |
80 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
3669877 |
catcatcaagaatatcaatttcacttgtagtttgaaccacaactcttggttccttaacagttctac |
3669812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 423 - 480
Target Start/End: Complemental strand, 3669374 - 3669317
Alignment:
| Q |
423 |
actgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatc |
480 |
Q |
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||||||||||||| ||||||||| |||| |||||||| |||| |||||| |||||||| |
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| T |
3669374 |
actgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatc |
3669317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 31614683 - 31614749
Alignment:
| Q |
15 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttctttaacagttctact |
81 |
Q |
| |
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||||||| ||||||||||| |||||||| || ||||||||||||||||||||| | ||||||||||| |
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| T |
31614683 |
catcatccaggatatcaatgtcacttgttgtctgaactacaactctaggttctctcacagttctact |
31614749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26966210 - 26966261
Alignment:
| Q |
15 |
catcatcaaggatatcaatttcacttgtagtttgaactacaactctaggttc |
66 |
Q |
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||||||| || |||||||| |||||||| |||||||| |||||||||||||| |
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| T |
26966210 |
catcatctagaatatcaatgtcacttgttgtttgaacaacaactctaggttc |
26966261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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