View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16054_low_9 (Length: 470)
Name: NF16054_low_9
Description: NF16054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16054_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 51430194 - 51430583
Alignment:
| Q |
12 |
gagatgaacttagggccagttttatttcnnnnnnnngtaaatatggcatcatctttataaatatggaatcatgtgcagctagtgatactgaatttggatt |
111 |
Q |
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| T |
51430194 |
gagatgaacttagggccagatttatttcctttttt-gtaaatatggcatcatctttataaatatggaatcatttgcagctagtgatactgaatttggatt |
51430292 |
T |
|
| Q |
112 |
gccaaacagnnnnnnnnnnnnnnnnnnnnnncttctcaaaaatagttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatc |
211 |
Q |
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| T |
51430293 |
gcgaaacagtttttttttttt----------cttcttaaaaatagttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatc |
51430382 |
T |
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| Q |
212 |
aaacgggccctttcaacacatggatgttaaaataggaacaataaatgtaaatgattgattgcaacatgtaataaacttaaac-ggcaccaacacactctt |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51430383 |
aaacaggccctttcaacacatggatgttaaaataggaacaataaatgtaaatgattgattgcaacatgtaataaacttaaactggcaccaacacactctt |
51430482 |
T |
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| Q |
311 |
atttcttactcacaaactcataatcccaaacaaacatgtacaagtaaaataatctcaatctataactaataatttgaaaagaaataaataaattcaaagc |
410 |
Q |
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| T |
51430483 |
atttcttactc------------------acaaacatgtacaagtaaaataatctcaatttataactaataatttgaaaagaaataaataaattcaaaga |
51430564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 27750074 - 27750154
Alignment:
| Q |
144 |
ttctcaaaaatagtttta-aaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
223 |
Q |
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| T |
27750074 |
ttcttaaaaatagttttttaaaactgattttcaattgagtatttaaaaactaaaaatcaaaacccaatcaaacaggccctt |
27750154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 33092587 - 33092522
Alignment:
| Q |
157 |
ttttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
223 |
Q |
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|||||||| ||||||||||||||||||| ||||||||| ||| ||| | | |||||||| ||||||| |
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| T |
33092587 |
ttttaaaa-ctgattttcaattgagtatttaaaaactaaaaatcaaaacccaatcaaacaggccctt |
33092522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 23495900 - 23495820
Alignment:
| Q |
144 |
ttctcaaaaatagtt-ttaaaagctgattttcaattgagtatataaaaactacaaaacaagatcaaatcaaacgggccctt |
223 |
Q |
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|||| |||||||||| || ||| ||||||||||||||||||| ||||||||| ||| ||| | |||||||| ||||||| |
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| T |
23495900 |
ttcttaaaaatagttcttgaaaactgattttcaattgagtatttaaaaactaaaaatcaaaactcaatcaaacaggccctt |
23495820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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