View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16055_high_11 (Length: 295)
Name: NF16055_high_11
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 26453517 - 26453638
Alignment:
| Q |
156 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcatagtgagatagtattgagagattcctcatatatattagagttttgc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26453517 |
ctaaatggcattgaagagaggctaaaacaaacaacattgtcttcttcaacatcataatgagatattattgagagattcctcatatatattagagttttgc |
26453616 |
T |
|
| Q |
256 |
aaaactaaatatgcatataagg |
277 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26453617 |
aaaactaaatatgcatataagg |
26453638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 26453251 - 26453425
Alignment:
| Q |
8 |
tcgaagaaaatattgagacttcttcttgatcagtaattccaatcatattccttcacctcgccaagatcaaacattgaaatatgttaaggaat-------- |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26453251 |
tcgaagaaaatattgagacttcttcttgatcagtaattccaatcatattccttcacctcaccaagatcaaacattgaaatatgttaaggaataaaaaaaa |
26453350 |
T |
|
| Q |
100 |
-------------aaaagattattaagaaagtcattaaaacaataagaatatcaaacataaaattcaatctaaat |
161 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26453351 |
aaatggaaagcgcaaaagattattaagaaagccattaaaacaataagaatatcaaacataaaattcaatcaaaat |
26453425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University