View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_high_5 (Length: 448)
Name: NF16055_high_5
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 165 - 433
Target Start/End: Original strand, 47957306 - 47957567
Alignment:
| Q |
165 |
tatatctgtcaaaaataagttgtaaacttttatatgtttagaataattagaggtcattatggactatgagtctatggtcactataggcaccttaatctta |
264 |
Q |
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| T |
47957306 |
tatatctgtcaaaaataagttgtaaacttttatatgtttagaataattagaggtcattatggactatgagtctatggtcactataggcacctta------ |
47957399 |
T |
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| Q |
265 |
attgaaattgaaatataaatttgactggtgatttcatcatgacaactaaaccattcatgtatttgtttttcataattcgacctaagaatccaaatattaa |
364 |
Q |
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| T |
47957400 |
attgaaattgaaatataaatttgactggtgatttcatcatgacaactaaaccattcatgtatttgtttttcataattcgacctaagaatccaaatattaa |
47957499 |
T |
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| Q |
365 |
tgtgtattttaacaacaaaaaccattaggaatttaaatgtgaaatggtctcactttatgatgatcatag |
433 |
Q |
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| T |
47957500 |
tgtgtattttaacaacaaaaaccattaggaatttaaatgtgaaatggtctcac-ttatgatgatcatag |
47957567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 47957232 - 47957290
Alignment:
| Q |
76 |
gtacgagtctggtttgcagatacgagacccttgtgagagaatctaaaggtccgaacaat |
134 |
Q |
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| T |
47957232 |
gtacgagtctcgtttgcagatacgagacccttgtgagagaatctaaaggtccgaacaat |
47957290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 48944579 - 48944611
Alignment:
| Q |
387 |
cattaggaatttaaatgtgaaatggtctcactt |
419 |
Q |
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| T |
48944579 |
cattaggaatttaaatgtgaaatggtctcactt |
48944611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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