View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16055_low_1 (Length: 665)
Name: NF16055_low_1
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_1 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 11 - 654
Target Start/End: Original strand, 14708 - 15351
Alignment:
| Q |
11 |
agatgaactaaaagcaaagcaaataacctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttatt |
110 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14708 |
agatgaactaaaagcaaagcacataatctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttatt |
14807 |
T |
|
| Q |
111 |
attggaaccttgtctattttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtag |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14808 |
atcggaaccttgtctattttcaatgttgatttgtagcaaagactcaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtag |
14907 |
T |
|
| Q |
211 |
attctaactgagaataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtatcaaggaggagtcatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14908 |
attctaactgagaataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtattaaggaggagtcatt |
15007 |
T |
|
| Q |
311 |
gaatttgataatgcggtcttccacactaaatgcttctaaatttgtgaagtaacctgtattaccaactaagggagtcgagacaacttcagaaccagaaacc |
410 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
15008 |
gaatttgataatgtggtctcccacgctaaatgcttctaaatttgtgaagtaacctgtagtaccaactaagggagtcgagacaacttcaggaccggaaact |
15107 |
T |
|
| Q |
411 |
actgccgtgtctccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaatt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15108 |
actgccgtgtctccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaatt |
15207 |
T |
|
| Q |
511 |
gagatattaacgataaaggtccgcgtccaaaacctattatgccagaggtattccctccctctgtttttaaactatttttgtgcccacatcctatcactat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15208 |
gagatattaacgataaaggtccgcgtccaaaacctattatgccagaagtattccctccctccgtttttaaactatttttgtgcccacatcctatcactat |
15307 |
T |
|
| Q |
611 |
tcttgaaaatgagataggagatccgtcgttagagtttaaagtga |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15308 |
tcttgaaaatgagataggagatccgtcgttagagtttaaagtga |
15351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 14 - 648
Target Start/End: Complemental strand, 8894994 - 8894354
Alignment:
| Q |
14 |
tgaactaaaagcaaagcaaataacctcgtgattaatttcaataaaggtgttaacagcattcaacgtgacattagcaccacgaaaatgagctgttattatt |
113 |
Q |
| |
|
|||| |||||||||| || |||||||| ||||| |||| |||||||||||||| |||||||||| |||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
8894994 |
tgaattaaaagcaaaacacataacctcatgattcatttgaataaaggtgttaaaagcattcaacttgacatcagcaccacgaaaatgtgctgtgattatc |
8894895 |
T |
|
| Q |
114 |
ggaaccttgtctattttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagatt |
213 |
Q |
| |
|
|| |||| || | |||||||||||| |||||| |||||||| ||||||||| |||| || ||||||||||||||||||| ||||||| |||| || || |
|
|
| T |
8894894 |
ggcacctcgtattttttcaatgttgttttgtaacaaagactcaattgttgagtagggtctttaacacgctttaacttaaccatagatattactgcagttt |
8894795 |
T |
|
| Q |
214 |
ctaactgagaataaacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttccttccttatcaggtatcaaggaggagtcattgaa |
313 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| |||||||| |||||||||| | ||| || || ||||| ||||| || || || || || || |
|
|
| T |
8894794 |
ctaactgagaataaacatcatttggcaactgggttatcgttgatcctgaatcaattacggcattgccctcattatccggtattaatgatgaatccttcaa |
8894695 |
T |
|
| Q |
314 |
tttgataatgcggtcttccacactaaatgcttctaaatttgtgaagtaa---cctgtattacca------actaagggagtcgagacaacttcagaacca |
404 |
Q |
| |
|
||| |||||| ||||| | |||||||||||||| ||||||||||||||| || || | | | ||| ||||| || ||||| | |||| |
|
|
| T |
8894694 |
ttttataatgtggtctccaacactaaatgcttccaaatttgtgaagtaattcccaacataaaaagattgtattaaaggagttgatacaaccccgtgacca |
8894595 |
T |
|
| Q |
405 |
gaaaccactgccgtgtctccaaaatttagtctgcttgaactgttagcatttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaac |
504 |
Q |
| |
|
|||||||||||| | |||||||||| |||| |||||||| | ||||| |||||||| |||| | | | ||||||||||||||| ||| ||| ||||||| |
|
|
| T |
8894594 |
gaaaccactgccatatctccaaaatatagtttgcttgaaatattagcctttgaaaacaatgacgctaaacaataagaaaatttcccaccaattgaagaac |
8894495 |
T |
|
| Q |
505 |
tcaattgagatattaacgataaaggtccgcgtccaaaacctattatgccagaggtattccctccctctgtttttaaactatttttgtgcccacatcctat |
604 |
Q |
| |
|
||| ||||||| | || ||| |||||||||||| || ||||||||||||| | ||||| ||| | |||||||| ||||| |||||||| || |
|
|
| T |
8894494 |
ccaactgagatacaattgaaaaatttccgcgtccaaagccaattatgccagaggctaac---ccctcggttgtcaaactattcttgtgtccacatccgat |
8894398 |
T |
|
| Q |
605 |
cactattcttgaaaatgagataggagatccgtcgttagagttta |
648 |
Q |
| |
|
||| ||| ||| ||||||||||||||| || || || ||||||| |
|
|
| T |
8894397 |
cacgatttttggaaatgagataggagagccatcatttgagttta |
8894354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 16803139 - 16803293
Alignment:
| Q |
127 |
ttttcaatgttgatttgtagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcatagatgccactgtagattctaactgagaata |
226 |
Q |
| |
|
|||| ||||| | |||||| ||||| | ||||||||||||||| |||| |||||| |||||||| |||||||| |||| ||||||||||| |||||| |
|
|
| T |
16803139 |
tttttaatgtggctttgtaacaaagcttgaattgttgattaggactcttagcacgctctaacttaaccatagatgtcactatagattctaacctagaata |
16803238 |
T |
|
| Q |
227 |
aacatcttctggcaaaatagttaatgttgatccagaatcaattattgtatttcct |
281 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
16803239 |
aacattctctggcaaaatagttaatgttgttcccgaatcaataattgtatttcct |
16803293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 540
Target Start/End: Original strand, 16803466 - 16803555
Alignment:
| Q |
451 |
catttgaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacgataaaggtccgcgtccaa |
540 |
Q |
| |
|
||||||||||||| || || | |||||| |||||||||||| |||||||||| ||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
16803466 |
catttgaaaataacggaaccaaacaatatgaaaattttccaccaatcgaagaattcaattgggatataaaagacaaaggtccacgtccaa |
16803555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 536
Target Start/End: Complemental strand, 19573772 - 19573692
Alignment:
| Q |
456 |
gaaaataatggcacgagacaataagaaaattttccattaatcgaagaactcaattgagatattaacgataaaggtccgcgt |
536 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| ||| |||||| ||||||| ||||| || || ||||| |||||| |
|
|
| T |
19573772 |
gaaaataatggaactagacaataagaaaattttccaccaattgaagaattcaattgggatataaaagacaaaggcccgcgt |
19573692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 19574072 - 19574019
Alignment:
| Q |
144 |
tagcaaagacttaattgttgattaggatccttaacacgctttaacttaatcata |
197 |
Q |
| |
|
||||||||| | || |||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
19574072 |
tagcaaagattgaactgttgactgggatccttaacacgctttaacttaaccata |
19574019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University