View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_10 (Length: 318)
Name: NF16055_low_10
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 1484245 - 1484535
Alignment:
| Q |
16 |
tgttgtgtactctgctgcttgcactggcgtaccttgtcaagagcacatggagatgaagggtcggctctcgaaatgtattgcctcagaaatgaatgctact |
115 |
Q |
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| T |
1484245 |
tgttgtgtactctgctgcttgcactggcgtaccttgtcaagagcacatggagatgaaggggcggctctcgaaatgtattgcctcagaaatgaatgctact |
1484344 |
T |
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| Q |
116 |
ccaattcaagaaatgaagtctaccaaagaaaagaaaagtcctgaatcctcttctgctaacaacactgagcatactaatttagaaatgctgactctataaa |
215 |
Q |
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| T |
1484345 |
ccaattcaagaaatgaagtctaccaaagaaaagaaaagtcctgaatcctcttctgctaacaacactgagcatactaatttagaaatgcagactctataaa |
1484444 |
T |
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| Q |
216 |
gtacaattgttaacatccaaaagagtaaaatgtattttggagttttgcttgatagtgaattattgtcctatacctttgggctaagatccct |
306 |
Q |
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| T |
1484445 |
gtacaattgttaacatccaaaagagtaaaatgtattttggagttttgcttgatagtgaattattgtcctatacctttgggctaagatccct |
1484535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 1444849 - 1445139
Alignment:
| Q |
16 |
tgttgtgtactctgctgcttgcactggcgtaccttgt--caagagcacatggagatgaagggtcggctctcgaaatgtattgcctcagaaa--------- |
104 |
Q |
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| T |
1444849 |
tgttgtgttcactgctgcttgcactggtgtgccttgtgtcaagaacacagggagatgaagggacggctctcggaaagtatttcctcagaaaccaccattg |
1444948 |
T |
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| Q |
105 |
tgaatgctactccaattcaagaaatgaagtctaccaaagaaaagaaaagtcctgaatcctcttctgctaacaacactgagcatactaatttagaaatgct |
204 |
Q |
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| T |
1444949 |
taaatcctcctccgattcaagaaatgaagtctgctgatgtaaaggagactcctgaatcctcttctgctaacaacagtgaccacactaatttagaaatgca |
1445048 |
T |
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| Q |
205 |
gactctataaag---tacaattgttaacatccaaaagagtaaaatgtattttggagttttgcttgatagtgaattattgtcctataccttt |
292 |
Q |
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| T |
1445049 |
ggctctatagagtattaacattgttaacatccaaaagagtaacatgtattttggaattttgcttggcagagaattattttcttataccttt |
1445139 |
T |
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