View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_11 (Length: 315)
Name: NF16055_low_11
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 1740076 - 1739795
Alignment:
| Q |
18 |
tgtttgcttttcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
117 |
Q |
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| T |
1740076 |
tgtttgctttgcaggagcattggaatttatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
1739977 |
T |
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| Q |
118 |
gtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatg |
217 |
Q |
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| T |
1739976 |
gtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatg |
1739877 |
T |
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| Q |
218 |
tatttaaattttaaattgtaacacataacatgtaacgtgccctttagtgcaacaatcaatttattttcactttcattttcat |
299 |
Q |
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| T |
1739876 |
tatttaaattttaaattgtaacacataacatgtaacgtgccctttagtgcaacattcaatttattttcactttcattttcat |
1739795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 1718738 - 1718514
Alignment:
| Q |
18 |
tgtttgcttttcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
117 |
Q |
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| T |
1718738 |
tgtttgctttgcaggagcattggaattcgtacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
1718639 |
T |
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| Q |
118 |
gtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatg |
217 |
Q |
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| T |
1718638 |
gtggatagcccaagatccaaacccacctaagcctttcgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctttgagatg |
1718539 |
T |
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| Q |
218 |
tatttaaattttaaattgtaacaca |
242 |
Q |
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| T |
1718538 |
tatttaaattttaaattgtaacaca |
1718514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 1750449 - 1750257
Alignment:
| Q |
18 |
tgtttgcttttcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1750449 |
tgtttgctttgcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtcagaatacctgttggatg |
1750350 |
T |
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| Q |
118 |
gtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctt |
210 |
Q |
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| T |
1750349 |
gtggatagcctatgatccaaatccacctaagccttttgttggaggatccttggctgcacttgacaatgcttttacatgggcacagtaagtctt |
1750257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 1755513 - 1755316
Alignment:
| Q |
18 |
tgtttgcttttcaggagcattggaattcatacataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatg |
117 |
Q |
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|||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1755513 |
tgtttgctttgcaggaccattggaattcttacataactgaagatgatttcacattcatgtcacaaaatggattaaatgcagtgagaatacctgttggatg |
1755414 |
T |
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| Q |
118 |
gtggatagctcaagatccaaatccacctaagccttttgttgggggagctttggcagcacttgacaatgctttcacatgggcatagtaagtctttgaga |
215 |
Q |
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| T |
1755413 |
gtggatagctcaagatccaaacccacctaagccttttgttggaggatcattggcagcattagacaatgctttcacatgggcacagtaagtctttgaga |
1755316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 38088597 - 38088448
Alignment:
| Q |
50 |
ataactgaagatgatttcagatttatgtcacaaaatggattagatgcagtgagaatacctgttggatggtggatagctcaagatccaaatccacctaagc |
149 |
Q |
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||||| ||||| ||||||||||| |||||| ||||||| ||| ||||||| ||||| || || || |||||||||||| | || |||| || ||||||| |
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| T |
38088597 |
ataacagaagaagatttcagattcatgtcagaaaatgggttaaatgcagtcagaattcccgtggggtggtggatagctaaggacccaacaccccctaagc |
38088498 |
T |
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| Q |
150 |
cttttgttgggggagctttggcagcacttgacaatgctttcacatgggca |
199 |
Q |
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| T |
38088497 |
catttgttggaggatccttgaaaacacttgacaatgccttcacatgggca |
38088448 |
T |
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