View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_15 (Length: 275)
Name: NF16055_low_15
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 11452901 - 11453149
Alignment:
| Q |
19 |
gtagggccggcagcagggccggaaacaggagggacagccacaataggctcctcagccactggggattgggcaggaggtgaatcaacaaagaggggaggag |
118 |
Q |
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| T |
11452901 |
gtagggccggcagcagggccggaaacaggagggacagccacaataggctcctcagccactggggattgggcaggaggtgaatcaacaaagaggggaggag |
11453000 |
T |
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| Q |
119 |
tatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtgatttcttttctgaagatgaagatggagctggtgatttcttttctga |
218 |
Q |
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| T |
11453001 |
catctgagattgttgggacatctaatcctgtaactggtcctgatgcctttggtgatttctttactgaagatgaagatggagctggtgatttcttttctga |
11453100 |
T |
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| Q |
219 |
agatggagctggtgagtcctttgttgatgactttggtgattcctttgct |
267 |
Q |
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| T |
11453101 |
agatggagctggtgagtcctttgctgatgactttggtgattcctttgct |
11453149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 11396220 - 11396320
Alignment:
| Q |
74 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
173 |
Q |
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| T |
11396220 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtga |
11396319 |
T |
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| Q |
174 |
t |
174 |
Q |
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| T |
11396320 |
t |
11396320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 11404242 - 11404342
Alignment:
| Q |
74 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
173 |
Q |
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| T |
11404242 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtga |
11404341 |
T |
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| Q |
174 |
t |
174 |
Q |
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| T |
11404342 |
t |
11404342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 11380842 - 11380942
Alignment:
| Q |
74 |
ccactggggattgggcaggaggtgaatcaacaaagaggggaggagtatctgagattgttgggacatctaatcctgtaactggtgctgatgcctttggtga |
173 |
Q |
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| T |
11380842 |
ccactggggattgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtga |
11380941 |
T |
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| Q |
174 |
t |
174 |
Q |
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| T |
11380942 |
t |
11380942 |
T |
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