View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16055_low_19 (Length: 223)

Name: NF16055_low_19
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16055_low_19
NF16055_low_19
[»] chr7 (10 HSPs)
chr7 (16-223)||(8608951-8609158)
chr7 (16-221)||(8601005-8601210)
chr7 (94-221)||(8383808-8383935)
chr7 (52-179)||(8589708-8589835)
chr7 (28-218)||(8544679-8544869)
chr7 (136-218)||(8569465-8569547)
chr7 (114-196)||(8580829-8580911)
chr7 (33-221)||(29578604-29578792)
chr7 (100-197)||(7878686-7878783)
chr7 (114-223)||(8537168-8537277)
[»] chr8 (1 HSPs)
chr8 (138-218)||(12527660-12527740)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 8608951 - 8609158
Alignment:
Q  16 tcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8608951 tcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccat 8609050  T
Q  116 ccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8609051 ccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagc 8609150  T
Q  216 ttcttgaa 223  Q
    ||||||||    
T  8609151 ttcttgaa 8609158  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 8601005 - 8601210
Alignment:
Q  16 tcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccat 115  Q
    ||||| |||| ||| ||||||||||| ||| |||| |||||||||||||  |||| ||||||| | ||  | || |||||||||||| |||||||  |||    
T  8601005 tcatgatgctgtttttcatcaatcaatttcattccctttatcattgcagagttgatcttcattctttctattgaagtaagcatggaactaacactatcat 8601104  T
Q  116 ccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagc 215  Q
    ||||||||||||| | |||  ||||||| |||||||||| | |||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  8601105 ccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatctttgaaattctcagc 8601204  T
Q  216 ttcttg 221  Q
    ||||||    
T  8601205 ttcttg 8601210  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 8383935 - 8383808
Alignment:
Q  94 agcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagt 193  Q
    ||||| |||||||||||  |||| ||||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||  ||||||||| ||    
T  8383935 agcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgt 8383836  T
Q  194 cttcctctttgaaattctcagcttcttg 221  Q
    ||||  | ||||||||||| || |||||    
T  8383835 cttcagccttgaaattctctgcctcttg 8383808  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 8589708 - 8589835
Alignment:
Q  52 tttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcat 151  Q
    ||||||||||||| |||||   ||| |||||||  ||| |||||| ||||||  |||||  |||||||||||||||||| ||||| |||||| |||||||    
T  8589708 tttatcattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcat 8589807  T
Q  152 ccaaaacattcattgctttaactttctt 179  Q
    | ||| ||||||||||| ||||||||||    
T  8589808 ctaaagcattcattgctctaactttctt 8589835  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 8544679 - 8544869
Alignment:
Q  28 ttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactt 127  Q
    |||| |||||||||| | ||||| ||||||||||||| |||||  |||||||||||   || ||  ||| ||||| ||||||   |||||||||||||||    
T  8544679 ttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactt 8544778  T
Q  128 tccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttc 218  Q
    ||| ||  |||||||| ||||  |||||| ||||  |||||| |||||| ||| | ||||||| |||||   | |||||||| ||||||||    
T  8544779 tcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttc 8544869  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 8569465 - 8569547
Alignment:
Q  136 ttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttc 218  Q
    |||||||| |||||||||||| ||||  |||||| |||||||||||| ||||||| |||||   | |||||||||||||||||    
T  8569465 ttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttc 8569547  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 8580829 - 8580911
Alignment:
Q  114 atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtctt 196  Q
    ||||| ||||||||||| ||  |||||||| ||||| |||||| |||| ||||||||||||||||| || |||| || |||||    
T  8580829 atcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtctt 8580911  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 29578792 - 29578604
Alignment:
Q  33 atcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgc 132  Q
    |||||||||| ||||||| || || || |||| || || |||||||||||| | ||  |  ||||||||| |||||||   ||||| ||||||||| | |    
T  29578792 atcaatcaaactctttccattcataatcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactc 29578693  T
Q  133 atgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttcttg 221  Q
     | |||||||| ||||| |||||| |||| |  ||| || |||||| || ||||||||  |||||  | ||||| ||||||||||||||    
T  29578692 gttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctcagcttcttg 29578604  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 7878783 - 7878686
Alignment:
Q  100 gaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttc 197  Q
    |||||||| ||  |||||||||||||||||| |||  | |||| |||||| |||||| |||||| |||| |||| ||||   ||||||||| ||||||    
T  7878783 gaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttc 7878686  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 8537168 - 8537277
Alignment:
Q  114 atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca 213  Q
    ||||||||| ||||||  ||  ||||| || || ||||||||| |||| ||||| | |  |||||| || ||||| | ||||||  ||||||||||||||    
T  8537168 atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca 8537267  T
Q  214 gcttcttgaa 223  Q
    ||||||||||    
T  8537268 gcttcttgaa 8537277  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 12527660 - 12527740
Alignment:
Q  138 gtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctcagcttc 218  Q
    |||||| || ||||||||| |||| |||||||||||||||||||| |||||||  |||||  | |||||||||||||||||    
T  12527660 gtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttc 12527740  T

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