View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_2 (Length: 630)
Name: NF16055_low_2
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 50456296 - 50455888
Alignment:
| Q |
19 |
aggagtttactcctccaacaattcctgaggaattcaacactgcaattaggagtggaaaagtacgtgcttcaactcatattaattatttcacaatcaatga |
118 |
Q |
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| T |
50456296 |
aggagtttactcctccaacaattcctgaggacttcaacactgcaattaggagtggaaaagtacgtgcttcaactcatatta----tttcacaatcaatga |
50456201 |
T |
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| Q |
119 |
tgagagaagttattatgctactta----gaaatgttttcggtttccattatgtatatattgttagatacaaagtataggtcatctctctcagtggcaatg |
214 |
Q |
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| T |
50456200 |
tgagagaagttattatgctacttaattagaaatgttttcggtttccattatgtgtatattgttagatacaaagtataggtcatctctctcagtggcaatg |
50456101 |
T |
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| Q |
215 |
ccatatccttttgtcttatggtaatctccaagatattgggatactcataatttggtgagcttaacagagatttaagttgtttagaactttattcctatcc |
314 |
Q |
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| T |
50456100 |
ccatatccttttgtcttatggtaatctccaagatattgggatactcatagtttggtgagcttagcagagatttaagttgtttagaactttattcctatcc |
50456001 |
T |
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| Q |
315 |
taatttttggtattactgtcaatagtaactagttaagataagcatcaagagccggttgactccaaactttaaaatgtgatggctccagtagccagctcca |
414 |
Q |
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| T |
50456000 |
taatttttggtattactgtcaattgtaactagttaagataagcatcaagagccggttgactccaaacattaaaatgtgatggctccagtagccagctcca |
50455901 |
T |
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| Q |
415 |
taatatattttta |
427 |
Q |
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| T |
50455900 |
taatatattttta |
50455888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 50455888 - 50455830
Alignment:
| Q |
516 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatga |
574 |
Q |
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| T |
50455888 |
actgctggttcgagttgtccatttaggagtagttcaaccatgatataaaaaggtaatga |
50455830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 13010754 - 13010676
Alignment:
| Q |
19 |
aggagtttactcctccaacaattcctgaggaattcaacactgcaattaggagtggaaaagtacgtgcttcaactcatat |
97 |
Q |
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| T |
13010754 |
aggaatttactcctccacaaatccctgaggaccttaacactgcaatcaagagtggaaaagtccgtgctccaactcatat |
13010676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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