View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_3 (Length: 577)
Name: NF16055_low_3
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 3016827 - 3016266
Alignment:
| Q |
1 |
aattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgtccaacaaccgacaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016827 |
aattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgtccaacaaccgacaagt |
3016728 |
T |
|
| Q |
101 |
atccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcaatgtcagtgatgtgtctgtatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3016727 |
atccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcagtgtcagtgatgtgtctgtatc |
3016628 |
T |
|
| Q |
201 |
catgtcagtgcttcatagatgaccgtgtcccatttattttatcccnnnnnnnctttctctccatattttaacatgaggatgtttatggtttcatgttgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016627 |
catgtcagtgcttcatagatgaccgtgtcccatttattttatccctttttttctttctctccatattttaacatgaggatgtttatggtttcatgttgca |
3016528 |
T |
|
| Q |
301 |
gttattcttcattcttgtgttggnnnnnnngctctgaagttaacagcatcgtcgtgtgaactgattgaagcaaagatgggttttgaaccattgatttggt |
400 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016527 |
gttattcttcattcttgtgttggaaaaaaagctctgaagttaacagcatcgtcgtgtgaactgattgaagcaaagatgggttttgaaccattgatttggt |
3016428 |
T |
|
| Q |
401 |
attgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgcttttgggtcatatacaccatgtgcaatcaatactcttgttatctcaacctc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016427 |
attgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgcttttgggtcatatacaccatgtgcaatcaatactcttgttatctcaacctc |
3016328 |
T |
|
| Q |
501 |
aaatttggttcttatggggttgtgtttatatagaatatggcttattattttcaatgccaaag |
562 |
Q |
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| T |
3016327 |
aaatttggttcttatggggttgtgtttatatagaatatggcttattattttcaatgccaaag |
3016266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 354 - 562
Target Start/End: Complemental strand, 3044892 - 3044684
Alignment:
| Q |
354 |
gtgtgaactgattgaagcaaagatgggttttgaaccattgatttggtattgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgctttt |
453 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3044892 |
gtgttaaccgattgaagcaaagatgggttttgaaccattggtttggtactgcaagccagaaccaaacagtatttggtctaaaacagtagatagtgctttt |
3044793 |
T |
|
| Q |
454 |
gggtcatatacaccatgtgcaatcaatactcttgttatctcaacctcaaatttggttcttatggggttgtgtttatatagaatatggcttattattttca |
553 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3044792 |
gggtcatatacaccatgtgcaattaacactcttgttatctcaacctcaaatttggttcttatggggctgtgtttatatagaatatggcttattattttca |
3044693 |
T |
|
| Q |
554 |
atgccaaag |
562 |
Q |
| |
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||||||||| |
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| T |
3044692 |
atgccaaag |
3044684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 19941743 - 19941702
Alignment:
| Q |
146 |
ctttatcaaattattactagtgttgacgtatcaatgtcagtg |
187 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
19941743 |
ctttctcaaattattactagtgttgatgtatcaatgtcagtg |
19941702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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