View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16055_low_8 (Length: 369)
Name: NF16055_low_8
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 48415684 - 48415824
Alignment:
| Q |
191 |
gatactctggcattggatccttcgcattcgatgtaacgatttacaataatgtcacccaaagaatgtgtttgttgttgttgtgatggttgaaatttatgct |
290 |
Q |
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| T |
48415684 |
gatactctggcattggatccttcgcattcaatgtaacgatttacaataatgtcacccaaagaatgtgtttgttgttgttgtgatggttgaaatttatgct |
48415783 |
T |
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| Q |
291 |
ggtgtgcctcatgtgattgataaaaatgttgatattcttcg |
331 |
Q |
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| T |
48415784 |
ggtgtacctcatgtgattgataaaaatgttgatattcttcg |
48415824 |
T |
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Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 48415481 - 48415604
Alignment:
| Q |
1 |
agatttgtacatttattccgggctcattgtacag-------aacatgtcatataatgtggctcagaagagtttatatgatggtgttagttttataaagaa |
93 |
Q |
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| T |
48415481 |
agatttgtacatttattctgggctcattgtacagttatcagaacatgtcatataatgtggctcagaagagtttatatgatggtgttagttttataaagaa |
48415580 |
T |
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| Q |
94 |
cggtctatataactatatgttgag |
117 |
Q |
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| T |
48415581 |
cggtctatataactatatgttgag |
48415604 |
T |
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