View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16055_low_9 (Length: 319)
Name: NF16055_low_9
Description: NF16055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16055_low_9 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 33388444 - 33388139
Alignment:
| Q |
1 |
tactcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388444 |
tactcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgat |
33388345 |
T |
|
| Q |
101 |
tcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388344 |
tcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaa |
33388245 |
T |
|
| Q |
201 |
atttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaacaagcataagtttgggtggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388244 |
atttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaacaagcataagtttgggtggat |
33388145 |
T |
|
| Q |
301 |
cacagg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
33388144 |
cacagg |
33388139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 52 - 282
Target Start/End: Original strand, 31562596 - 31562826
Alignment:
| Q |
52 |
tttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgat |
151 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||| ||||| || ||| |||||||||||||| ||| ||||||| ||||||||||||||||||| || |
|
|
| T |
31562596 |
tttgcgtacagttgacattagcttttgccgtctaagccaagtgcctgatgcaattgaatgtttaagctcgctagaaagattaaatttagggggaaactat |
31562695 |
T |
|
| Q |
152 |
tttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttctctta |
251 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||| || |
|
|
| T |
31562696 |
tttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaatttggagcattgcgagttgttggaatctttgcctcaacttccttctccta |
31562795 |
T |
|
| Q |
252 |
ccactattgggcgggatcatcgtgagaacaa |
282 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
31562796 |
ccactattgggcgggatcgtcgtgagaacaa |
31562826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 33410288 - 33410033
Alignment:
| Q |
2 |
actcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgatt |
101 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||| |
|
|
| T |
33410288 |
actcccacgagaaacacatattgcttgccatcattgcatagcttatattgtttgcgtcaagttgatattagcttttgccatctaaaccaagttcctgatg |
33410189 |
T |
|
| Q |
102 |
caattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaa |
201 |
Q |
| |
|
|||||||| ||||||| || ||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
33410188 |
caattgaaggtttacattcgctagaaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttaga |
33410089 |
T |
|
| Q |
202 |
tttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccacta |
257 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| ||||||||||||| || |||||||| |
|
|
| T |
33410088 |
tttgcagcattgcaagttgttggaatctttgcctcaacttccttttcctaccacta |
33410033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 33644283 - 33644530
Alignment:
| Q |
20 |
tatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacact |
119 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||| |||||||||||| ||| | ||||| || ||||| |||||||||||||||||||| | |
|
|
| T |
33644283 |
tattcgttgccatccttgcatagcttatattgtttgcgtagcattgacattagctattgccgtctaagccatgttcctgattcaattgaatgtttacatt |
33644382 |
T |
|
| Q |
120 |
cactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagtt |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
33644383 |
cgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggaacactgcaagtt |
33644482 |
T |
|
| Q |
220 |
cttgaaatcttttcctcaacttccttctcttaccactattgggcggga |
267 |
Q |
| |
|
||| ||||||| |||||||||||||| | |||||||||||||||||| |
|
|
| T |
33644483 |
gttggaatctttgcctcaacttccttcccctaccactattgggcggga |
33644530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 33304754 - 33304510
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||| ||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
33304754 |
acacatatttgttgccatccttgcatagcttagtttgtttgcgagacgttgacattagcttttgccatctaagccaagttcctgatgcaattgaatgttt |
33304655 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
| |||| ||||||| |||||| |||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33304654 |
atactcgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaatttgcagcattgc |
33304555 |
T |
|
| Q |
215 |
aagttcttgaaatcttttcctcaacttccttctcttaccactatt |
259 |
Q |
| |
|
| ||| ||| ||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
33304554 |
atgttgttggaatctttgcctcaacttccttctcctaccaatatt |
33304510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 33399324 - 33399072
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| ||| |
|
|
| T |
33399324 |
acacatatttgttgccatccttgcatagcttagattgtttgcgtggagttgacattagcttttgcaatctaagccaagttcctgatgcaattgaagattt |
33399225 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
||| | ||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||| |
|
|
| T |
33399224 |
acattggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaatttggaacactgc |
33399125 |
T |
|
| Q |
215 |
aagttcttgaaatcttttcctcaacttccttctcttaccactattgggcggga |
267 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||| | |||||||||||||||||| |
|
|
| T |
33399124 |
aagttgttggaatctttgcctcaacttccttcccctaccactattgggcggga |
33399072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 33262896 - 33262632
Alignment:
| Q |
15 |
acacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttt |
114 |
Q |
| |
|
|||||| | ||||||| ||| ||| ||| ||| ||||||||||||| |||||||| |||||||| ||||| ||||| || | |||||||||| || |
|
|
| T |
33262896 |
acacatctctgttgccttccttgcgtagtttacattgtttgcgtaatgttgacataagcttttgctatctacgccaagtgcctggcacaattgaatgctt |
33262797 |
T |
|
| Q |
115 |
acactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgc |
214 |
Q |
| |
|
||| | ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262796 |
acattggctagaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaatttggagcattgc |
33262697 |
T |
|
| Q |
215 |
aagttcttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaa |
279 |
Q |
| |
|
| ||| ||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
33262696 |
aggttgttggaatctttgcctcaacttccttctcctacctctattgggcgggatcatcgtgagaa |
33262632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 33285885 - 33285621
Alignment:
| Q |
18 |
catatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttaca |
117 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| ||||| | || |||||||||||||| | |
|
|
| T |
33285885 |
catatgtgttgtcatccttgcatagcttatattgtttgcgtgaagttaacattagcttttgccgtctaagccaagtgtcatatgcaattgaatgtttata |
33285786 |
T |
|
| Q |
118 |
ctcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaag |
217 |
Q |
| |
|
| ||||||| |||||| |||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33285785 |
ttggctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaatttggagcattgcaag |
33285686 |
T |
|
| Q |
218 |
ttcttgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgagaacaa |
282 |
Q |
| |
|
|| ||| ||||||| ||||||||||||| || ||||| ||||||| |||||||||||||||||| |
|
|
| T |
33285685 |
ttgttggaatctttgcctcaacttccttttcctaccaatattggggaggatcatcgtgagaacaa |
33285621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 267
Target Start/End: Complemental strand, 33359104 - 33358885
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||| |||| | |||| ||||| ||||||| ||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
33359104 |
attgtttgcgtgttgttgcctttagtttttgccatctaagtcaagttcccgatgcaattgaatgtttacattggctagaaatattaaatttagggggaaa |
33359005 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttct |
247 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||| | |
|
|
| T |
33359004 |
cgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttcctttt |
33358905 |
T |
|
| Q |
248 |
cttaccactattgggcggga |
267 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
33358904 |
cctaccactattgggtggga |
33358885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 33057830 - 33057577
Alignment:
| Q |
24 |
tgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcact |
123 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||||| |||||||| |||||||| |||||| || || || ||| |||||||||||||||| | || |
|
|
| T |
33057830 |
tgttgccttccttgcatagtttatgttgtttgcgtaaggttgacataagcttttgctatctaagccatgtgcctgatgcaattgaatgtttacattggct |
33057731 |
T |
|
| Q |
124 |
agaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttg |
223 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
33057730 |
agaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaatttggagcattgcaaattgttg |
33057631 |
T |
|
| Q |
224 |
aaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgag |
277 |
Q |
| |
|
||||||| ||||||||||||| || ||||| || |||| || |||||||||| |
|
|
| T |
33057630 |
gaatctttgcctcaacttccttttcctaccaatactggggaggttcatcgtgag |
33057577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 63 - 270
Target Start/End: Complemental strand, 33272047 - 33271840
Alignment:
| Q |
63 |
ttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacact |
162 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||| |||||||||||||||| | ||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
33272047 |
ttgacattagcttttgccatctacgccaagttcctgatgcaattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacact |
33271948 |
T |
|
| Q |
163 |
acctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccactattggg |
262 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||| ||||||||||| | |||| |||| |
|
|
| T |
33271947 |
acctagcctgaggaagctttccaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcgacttccttctccacctactagtggg |
33271848 |
T |
|
| Q |
263 |
cgggatca |
270 |
Q |
| |
|
|||||||| |
|
|
| T |
33271847 |
cgggatca |
33271840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 9167021 - 9166792
Alignment:
| Q |
16 |
cacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgttta |
115 |
Q |
| |
|
|||||||||||||| ||| ||| ||| ||| ||||||||||| ||||||||||||||| ||| ||||||| ||| | || ||| |||||||||||||| |
|
|
| T |
9167021 |
cacatatttgttgcattccttgcgtagtttatattgtttgcgtgaagttgacattagctattgccatctaagccaattgcctgatacaattgaatgttta |
9166922 |
T |
|
| Q |
116 |
cactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
215 |
Q |
| |
|
| | ||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166921 |
cggtggctagaaagattaaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgca |
9166822 |
T |
|
| Q |
216 |
agttcttgaaatcttttcctcaacttcctt |
245 |
Q |
| |
|
||| ||| | | ||| ||||||||||||| |
|
|
| T |
9166821 |
ggttgttggagtttttgcctcaacttcctt |
9166792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 28870014 - 28870170
Alignment:
| Q |
122 |
ctagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttct |
221 |
Q |
| |
|
||||||| |||||| ||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
28870014 |
ctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttgt |
28870113 |
T |
|
| Q |
222 |
tgaaatcttttcctcaacttccttctcttaccactattgggcgggatcatcgtgaga |
278 |
Q |
| |
|
| ||||||| |||||||||||||||| |||| |||| ||||||||| || |||||| |
|
|
| T |
28870114 |
ttgaatctttgcctcaacttccttctcctacccctatcgggcgggataattgtgaga |
28870170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 28869928 - 28870012
Alignment:
| Q |
2 |
actcccatgagaaacacatatttgttgccatccgtgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaa |
86 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| || |||||||| |||||||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
28869928 |
actcccacgagaaacacatacttgttgccatccttgaatagcttatattgtttgtgtaacgttgacgttagcttttgccatctaa |
28870012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 17440639 - 17440870
Alignment:
| Q |
36 |
tgcatagcttaaattgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaa |
135 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||| | ||||| ||||| || ||| |||||||||||||||| | |||||| |||||| |
|
|
| T |
17440639 |
tgcatagcttatattgtttgcgtgaagttgacattagtttttgccgtctaagccaagtgccggatacaattgaatgtttacattgggtagaaagattaaa |
17440738 |
T |
|
| Q |
136 |
tttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcct |
235 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| ||| |
|
|
| T |
17440739 |
tttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaatttgcagcattgcaagttgttggaatctttgcct |
17440838 |
T |
|
| Q |
236 |
caacttccttctcttaccactattgggcggga |
267 |
Q |
| |
|
|||||||||| || |||| |||| |||||||| |
|
|
| T |
17440839 |
caacttccttttcctaccgctatcgggcggga |
17440870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 282
Target Start/End: Complemental strand, 884 - 650
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
884 |
attgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaa |
785 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttct |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||| | |
|
|
| T |
784 |
taattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcctttt |
685 |
T |
|
| Q |
248 |
cttaccactattgggcgggatcatcgtgagaacaa |
282 |
Q |
| |
|
| | ||||||||||| |||| ||| ||||||||| |
|
|
| T |
684 |
ccaagcactattgggccggattatcatgagaacaa |
650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 48 - 282
Target Start/End: Complemental strand, 6630 - 6396
Alignment:
| Q |
48 |
attgtttgcgtaaagttgacattagcttttgtcatctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaa |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
6630 |
attgtttgcgtaacattgacattagcttttgccatctaagccatgttcctgatgcaattgaatgtttacatcggctagaaagattaaatttagggggaaa |
6531 |
T |
|
| Q |
148 |
cgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttct |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||| | |
|
|
| T |
6530 |
taattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaatttggagcattgcaagttgttggaatcgttgcctcaacttcctttt |
6431 |
T |
|
| Q |
248 |
cttaccactattgggcgggatcatcgtgagaacaa |
282 |
Q |
| |
|
| | ||||||||||| |||| ||| ||||||||| |
|
|
| T |
6430 |
ccaagcactattgggccggattatcatgagaacaa |
6396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 31157381 - 31157257
Alignment:
| Q |
121 |
actagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttc |
220 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
31157381 |
actagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaagctt |
31157282 |
T |
|
| Q |
221 |
ttgaaatcttttcctcaacttcctt |
245 |
Q |
| |
|
||| ||||||| ||||||||||||| |
|
|
| T |
31157281 |
ttggaatctttgcctcaacttcctt |
31157257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 31498853 - 31499016
Alignment:
| Q |
82 |
tctaaatcaagttcccgattcaattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctt |
181 |
Q |
| |
|
|||||| ||| | |||||| |||||| ||||||||| | ||||| | |||||||||||||||||| | ||||||||| |||||||| ||||| | ||| |
|
|
| T |
31498853 |
tctaaaccaactccccgatgcaattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctt |
31498952 |
T |
|
| Q |
182 |
tccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttcctt |
245 |
Q |
| |
|
||||||||||||| |||||| || || |||||||| || ||| ||||||| ||||||||||||| |
|
|
| T |
31498953 |
tccaaacttgtatgtttaaacttagaacattgcaaattgttggaatctttgcctcaacttcctt |
31499016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 31478846 - 31478964
Alignment:
| Q |
130 |
attaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatct |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||| |||||||||||||||| || |||||||||||| | ||||||||| |
|
|
| T |
31478846 |
attaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaagcttagagcattgcaagctgttgaaatct |
31478945 |
T |
|
| Q |
230 |
tttcctcaacttccttctc |
248 |
Q |
| |
|
|| ||| ||||||||||| |
|
|
| T |
31478946 |
ttgcctgtacttccttctc |
31478964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 31148466 - 31148343
Alignment:
| Q |
122 |
ctagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttct |
221 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||||| |||||||| | |||||||| |||| ||||| ||||||||| ||| ||||||| ||||| | |
|
|
| T |
31148466 |
ctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaacttgcagcattgtaagttgt |
31148367 |
T |
|
| Q |
222 |
tgaaatcttttcctcaacttcctt |
245 |
Q |
| |
|
||||||| || ||||||||||||| |
|
|
| T |
31148366 |
tgaaatcgttgcctcaacttcctt |
31148343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 31504032 - 31504117
Alignment:
| Q |
131 |
ttaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaa |
216 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31504032 |
ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaa |
31504117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 31472411 - 31472509
Alignment:
| Q |
150 |
attttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatcttttcctcaacttccttctc |
248 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||| || || ||| || | ||||||||||| ||| |||||||||||| |
|
|
| T |
31472411 |
attttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaacttagaacatcgcccgcagttgaaatctttgcctaaacttccttctc |
31472509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 31526569 - 31526488
Alignment:
| Q |
123 |
tagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaattt |
204 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| | ||||| || || | ||||| ||||||| |||||| ||||| |
|
|
| T |
31526569 |
tagaaagattaaatttagggggaaacaattttgtgacattgcctagtttcagagaactttcaaaacttgcatatttgaattt |
31526488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 6785240 - 6785354
Alignment:
| Q |
130 |
attaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaatttggagcattgcaagttcttgaaatct |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||| ||| | ||||||||||||| ||||||||||| ||||| || |||||||| ||||||| | |
|
|
| T |
6785240 |
attaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaaatat |
6785339 |
T |
|
| Q |
230 |
tttcctcaacttcct |
244 |
Q |
| |
|
|| ||| | |||||| |
|
|
| T |
6785340 |
ttgcctgatcttcct |
6785354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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