View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16056_high_11 (Length: 551)
Name: NF16056_high_11
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 41104060 - 41103528
Alignment:
| Q |
1 |
caaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattctaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41104060 |
caaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattctaat |
41103961 |
T |
|
| Q |
101 |
tctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattccacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103960 |
tctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattccacct |
41103861 |
T |
|
| Q |
201 |
ccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccgatttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41103860 |
ccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccgattcga |
41103761 |
T |
|
| Q |
301 |
ctctgaatcgatctctgttcgttcttccactgatcgtcggagtagttcttctgacgaggaattctctgacgacgacggctcatcactcgcagcagactca |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41103760 |
ctctgaatcgatctcttttcgttcttccactgatcgtcggagtagttcttctgacgaggaattctccgacgacgacggctcatcactcgcagcagactca |
41103661 |
T |
|
| Q |
401 |
gtatctatgtctgctgttgctgatttgaaagctattgcagagtgtatgattttcaccggttacagtaaagaatgtgtgaatatttacttaatcgtgagaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103660 |
gtatctatgtctgctgttgctgatttgaaagctattgcagagtgtatgattttcaccggttacagtaaagaatgtgtgaatatttacttaatcgtgagaa |
41103561 |
T |
|
| Q |
501 |
aatctattatggatgaagctttgtacaatctcg |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41103560 |
aatctattatggatgaagctttgtacaatctcg |
41103528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University