View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_15 (Length: 522)
Name: NF16056_high_15
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 230 - 504
Target Start/End: Complemental strand, 10724719 - 10724445
Alignment:
| Q |
230 |
tgatgatggctattatagtttatacatatatgtatataccttactgtatgacatacttggttattgaatatttgtttgtatatatccagttgtgcctgtg |
329 |
Q |
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| T |
10724719 |
tgatgatggctattatagtttatacatatatgtatataccttactgtatgacatacttggttattgaatatttgtttgtatatatccagttgtgcctgtg |
10724620 |
T |
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| Q |
330 |
tttaactagtaatgtgttacatctaacggattatacttttctgtgcagcaatttctgaaagatatactgaaagatctttgtgtctacaataacaaaggaa |
429 |
Q |
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| T |
10724619 |
tttaactagtaatgtgttacatctaacggattatacttttctgtgcagcaatttctgaaagatatactgaaagatctttgtgtctacaataacaaaggaa |
10724520 |
T |
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| Q |
430 |
ctaatcaaggcacctatgagctgaagcctgaatacagaaaaactggcgattagctgcaaataccaatgctcataa |
504 |
Q |
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| T |
10724519 |
ctaatcaaggcacctatgagctgaagcctgaatacagaaaaactggcgattagctgcaaataccaatgctcataa |
10724445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 10724983 - 10724770
Alignment:
| Q |
17 |
atcaaaggtgtgtttggtgtctgtcgccgacatgacagtnnnnnnntatcgttgttacataaatcactttcattttctcaaattactgttggtgccaaca |
116 |
Q |
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| T |
10724983 |
atcaaaggtgtgttcagtgtccgtcgccgacatgacactaaaaaa-tatcgttgttacataaatcactttcattttctcaaattactattggtgtcaaca |
10724885 |
T |
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| Q |
117 |
tatgagtatctatgtttgtgtcagtgtttcatagactccaattgcttcaagtatatgtaaaacatgaatctatggttaatgctcatagacccatttgatt |
216 |
Q |
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| T |
10724884 |
tatcagtatctatgtttgtctcggtgtttcatagactccaattgcttcaagtatacgt-aaacatgaatctatggttaatgctcgtagacccatttgatt |
10724786 |
T |
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| Q |
217 |
atatttatgcaattga |
232 |
Q |
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| T |
10724785 |
atatttatgcaattga |
10724770 |
T |
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