View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_16 (Length: 484)
Name: NF16056_high_16
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 40056786 - 40057227
Alignment:
| Q |
19 |
caatatgtgtgaaaattaacggaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaa |
118 |
Q |
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| T |
40056786 |
caatatgtgtgaaaattaacgaaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttta |
40056885 |
T |
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| Q |
119 |
aactataggagatcttggtgtcattttcataaatcttagaggaagtgaatgcaannnnnnnctgaaataaaaatttccaacagagttaactgttgttggt |
218 |
Q |
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| T |
40056886 |
aactataggagatcttggtgtcattttcataaatcttagaggaagtgaatgcaa-ttttttctgaaataaaaatttccaacagagttaactgttgttggt |
40056984 |
T |
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| Q |
219 |
tgtcggcggctgtagttaactgtcgtataggacttaat-nnnnnnnnttgtcgtttgaggtgttttggtcttttcagatgatttggagaaaaaatgaaag |
317 |
Q |
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| T |
40056985 |
tgtcggcgtttgtagttaactgtcgtagaggacttagtaaaaaaaaatagccatttgaggtgttttggtcttttcagatgatttggagaaaaaatgagag |
40057084 |
T |
|
| Q |
318 |
cgtaaagagtaatttttcaacctattgaccacattacgtagcacagttcaagcccaaacaaaatatttatcatttgttagtannnnnnnnnnnnnngtgg |
417 |
Q |
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| T |
40057085 |
cgtaaagagtaatttttcaacctattgacc-----acgtagcacagttcaagcccaaacaaaatatttatcatttgttagta-----attttttttgtgg |
40057174 |
T |
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| Q |
418 |
tggccggggtttgaatctgtcagtaattctgaatatatttatctataccacct |
470 |
Q |
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| T |
40057175 |
tggccggggtttgaatctatcagtaattctgaatatatttatctataccacct |
40057227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 35064378 - 35064477
Alignment:
| Q |
52 |
tgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaactataggagatcttggtgtcattttcataaa |
151 |
Q |
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| T |
35064378 |
tgttaacaaataagggaggtatttatctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaa |
35064477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 1300096 - 1300052
Alignment:
| Q |
47 |
aacggtgttaacaagtaagggatgtgtttgtctatttcatgagaa |
91 |
Q |
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| T |
1300096 |
aacggtgttaataaggaagggaggtgtttgtctatttcattagaa |
1300052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 41714166 - 41714118
Alignment:
| Q |
96 |
aaggagataagtgtaagttttaaaactataggagatcttggtgtcattt |
144 |
Q |
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| T |
41714166 |
aaggaggttagtgtaagttttaaaattagaggagatgttggtgtcattt |
41714118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 35145725 - 35145621
Alignment:
| Q |
19 |
caatatgtgtgaaaattaacggaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaa |
118 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||| | |||||||||||||| |
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| T |
35145725 |
caatatgtgtgaaaattaacggaaaagtaactgtgttaacaagtaagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaa |
35145626 |
T |
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| Q |
119 |
aacta |
123 |
Q |
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||||| |
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| T |
35145625 |
aacta |
35145621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 39484489 - 39484360
Alignment:
| Q |
19 |
caatatgtgtgaaaattaacggaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaa |
118 |
Q |
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|||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| | ||||||||||||| | || |||| |||||||||||||||| |
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| T |
39484489 |
caatatctgtgaaaattaacggaaaagtaacggtgttaataaataagggatgtgtttatatatttcatgagaacttgagggaggtaagtgtaagttttaa |
39484390 |
T |
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| Q |
119 |
aactataggagatcttggtgtcattttcat |
148 |
Q |
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| T |
39484389 |
aattagtggggatattggtgtcattttcat |
39484360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 50071391 - 50071335
Alignment:
| Q |
32 |
aattaacggaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatga |
88 |
Q |
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| T |
50071391 |
aattaactgaaaactaacggtgttaataagtaagggaagtgtttgtgtatttgatga |
50071335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 25476028 - 25476116
Alignment:
| Q |
35 |
taacggaaaagcaacggtgttaacaagtaagggatgtgtttgtctatttcatgagaattcgaaggagataagtgtaagttttaaaacta |
123 |
Q |
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| T |
25476028 |
taacggaaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaacta |
25476116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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