View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_18 (Length: 457)
Name: NF16056_high_18
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 2007263 - 2007636
Alignment:
| Q |
13 |
gcaaagggtgctgttgagtgtctgaaaaaacttgtcctgcaagactgttacaactttacattttcaggaatcttttatgttttatccaaatgtcaatatg |
112 |
Q |
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| T |
2007263 |
gcaaagggtgctgttgagtgtctgaaaaaacttgtcctgcaagactgttgcaactttacattttcaggaatcttttatgttttatccaaatgtcaatatg |
2007362 |
T |
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| Q |
113 |
ttcaatgcttagattttcgaaaagccgactttctaactgatcaatgtatcaacaagttttcaatatttcttcataacttgacctctataaaccttagcgg |
212 |
Q |
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| T |
2007363 |
ttcaatgcttagattttcgaaaagctgactttctaactgatcaatgtatcaacaagttttcaatatttcttcataacttgacctctataaaccttagcgg |
2007462 |
T |
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| Q |
213 |
ttgttgccagctaacaaactcaaccttttacatactcacgagaaattgttcattactaagtgagatcaaaatggagagaacgtatatcggagtagaaggt |
312 |
Q |
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| T |
2007463 |
ttgttgccagctaacaaactcaacctttttcatactcacgagaaattgtcccttactaagtgagatcaaaatggagagaacgtatatcggagtagaaggt |
2007562 |
T |
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| Q |
313 |
aaggaagattccaactccatgttggattttttcgtcaaccatcaaataaaagcggtttatgttggtgataatat |
386 |
Q |
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| T |
2007563 |
aaggaagattccaactccatgttggattttttcgtcaaccatcaagtaaaagcggtttatgttggtgataatat |
2007636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 1743113 - 1742693
Alignment:
| Q |
19 |
ggtgctgttgagtgtctgaaaaaacttgtcctgcaagactgttacaactttacattttcaggaatcttttatgttttatccaaatgtcaatatgttcaat |
118 |
Q |
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| T |
1743113 |
ggtgctgttaattttctgaaaaaacttgtccttcaagactgttgcaactttacattttcaggaatattttatgttttatccaaatgtcaatatgttcaat |
1743014 |
T |
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| Q |
119 |
gcttagattttcgaaaagccgactttctaactgatcaatgtatcaacaagttttcaatatttcttcataacttgacctctataaaccttagcggttgttg |
218 |
Q |
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| T |
1743013 |
ccttagatcttcgtaaagccgactttctaactgatcaatgtatcaacaagttatcgatatttcttattaacttgacctctataaaccttagtggttgttg |
1742914 |
T |
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| Q |
219 |
ccagctaacaaactcaaccttttacatactcacgagaaattgttcattactaagtgagatcaaaatggagagaacgtatatcggagtagaaggtaaggaa |
318 |
Q |
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| T |
1742913 |
ccagctaacgaactcaacctttttcatactcacaagaaattgtcccttgctacttgagatcaaaatggagagaacgtatatcggggtagaaggtgaggaa |
1742814 |
T |
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| Q |
319 |
gattccaactccatgttggattttttcgtcaaccatcaaataaaagcggtttatgttggtgataatattttattgaatgatgaaagtttaatcaaattat |
418 |
Q |
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| T |
1742813 |
gattccaattccatgtcagattttgtcgtcaaccgtcaagtaaaagcggttcatttgggtgataatattttactgaatgatgctagtttaatcaaattca |
1742714 |
T |
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| Q |
419 |
cttcaatttgctccggtttac |
439 |
Q |
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|||| |||||| | ||||||| |
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| T |
1742713 |
cttccatttgcgctggtttac |
1742693 |
T |
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