View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_29 (Length: 379)
Name: NF16056_high_29
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 4947116 - 4947475
Alignment:
| Q |
1 |
gtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaagcaattttataaccttgattattcagatgtaaaacctaaagtc |
100 |
Q |
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| T |
4947116 |
gtcatcacctcaactcatttcttttgagcactccagttcaacaccaattgcttcaaagcaattttataaccttgattattcagatgtaaaacctaaagtc |
4947215 |
T |
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| Q |
101 |
gagaaaaggtttaatgaaaacaaggattttctaccagctttggtttctcaaggttcttatgaagatcaaaaaatattttccaattatgataaccaagcga |
200 |
Q |
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| T |
4947216 |
gggaaaaggtgtaatgaaaacaaggattttctaccagctttggtttctcaaggttcttatgaagatcaaaaaatattttccaattatgataaccaagcga |
4947315 |
T |
|
| Q |
201 |
atcagaccagaaacacttctcaagctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgt |
300 |
Q |
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| T |
4947316 |
atcagaccagaaacactgctcaagctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgt |
4947415 |
T |
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| Q |
301 |
tcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgtaact |
360 |
Q |
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| T |
4947416 |
tcctggcctcaagaaggtatgatcttattcaactcataaacatgttattataatgtaact |
4947475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 40441933 - 40441838
Alignment:
| Q |
224 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
319 |
Q |
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| T |
40441933 |
gctcgagatcatgttatcgccgaaagaaaacgaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggta |
40441838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 40426845 - 40426750
Alignment:
| Q |
224 |
gctcgagaacatgtaatggccgaaagaaaacgaagggaaaagcttacccgaagtttcatcgctctttcagccattgttcctggcctcaagaaggta |
319 |
Q |
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| T |
40426845 |
gctcaagatcatgttatggccgaaagaagacgaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggta |
40426750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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