View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_3 (Length: 766)
Name: NF16056_high_3
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 1 - 753
Target Start/End: Complemental strand, 5301346 - 5300594
Alignment:
| Q |
1 |
aatatccaaaggcgcaaaacagtctatagccattcttcgcagaatgctgatggccaaggggttgctgctccactagcagaatccgatcgacagacattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5301346 |
aatatccaaaggcgcaaaacagtctatagccattcttcgcagaatgctgatggccaaggggttgctgctccactagcagaatccgatcgacagacattga |
5301247 |
T |
|
| Q |
101 |
atgcttatattcaaaatcttaaacacgacagagaacaaatgtttctggaaattcagagaaaggaagaggtgaagaaaatgaatgagataacatcacagta |
200 |
Q |
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| T |
5301246 |
atgcttatgttcaaaatcttaaacacgacagagaacaaatgtttctggaaattcagagaaaggaagaggtgaagaaaatgaatgagataacatcacagta |
5301147 |
T |
|
| Q |
201 |
catgaagggtcatttggaaactttggaaaagaaacatcaaagtgtgctctcttctgttgatcaagtgctgaagaaacctgggaaaaaggagcgaaaaagg |
300 |
Q |
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| T |
5301146 |
catgaagggtcatttggaaactttggaaaagaaacatcaaagtgtgctctcttctgttggtcaagtgctgaagaaacctgggaaaaaggagcaaaaaagg |
5301047 |
T |
|
| Q |
301 |
aggattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaatacacaaggaaaacgacccgagtgtgtctc |
400 |
Q |
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| T |
5301046 |
aagattccgagaaacaatcctttttgttatgtagctagcactgaagatcatgtgggaacttctcatgtaatacacaaagaaaacgacccgggtgtgtctc |
5300947 |
T |
|
| Q |
401 |
gtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaatgatgttggtgccgaagttcagcccaagtc |
500 |
Q |
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| T |
5300946 |
gtctatcattaaacttggaacaattggatctgctcgactcatcaatgacattttgggaggagattacaaatgatgttggtgccgaagttcagcccaagtc |
5300847 |
T |
|
| Q |
501 |
actagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgag |
600 |
Q |
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| T |
5300846 |
actagaagtcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgag |
5300747 |
T |
|
| Q |
601 |
ctggatgtaatcgttgttcctaatccggttgcaactgagccagcggtaatcaatgcttccgatcttgttgcagttgacccaactgttgcagttgtccctg |
700 |
Q |
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| T |
5300746 |
ctggatgtaatcgttgttcctaatccggttgcaactgagccagcggtaatcaatgcttccgatcttgttgcagttgacccaactgttgcagttgtccctg |
5300647 |
T |
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| Q |
701 |
attttgttgaaccaaaagaacaacccatcgtaacatccctggttactactgat |
753 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5300646 |
attttgttgaaccaaaagaacaacccgtcgtaacatccctggttactactgat |
5300594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 15620797 - 15620872
Alignment:
| Q |
26 |
atagccattcttcgcagaatgctgatggccaaggggttgctgctccactagcagaatccgatcgacagacattaaa |
101 |
Q |
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| T |
15620797 |
atagccattctttgcagaatcctaatggccaaggggttgctgctacactaacagaattggaacgacagactttaaa |
15620872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 601
Target Start/End: Original strand, 52000304 - 52000369
Alignment:
| Q |
536 |
ttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagc |
601 |
Q |
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| T |
52000304 |
ttgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcatgttgcaactgagc |
52000369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 602
Target Start/End: Original strand, 15621297 - 15621415
Alignment:
| Q |
484 |
gaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattccta |
583 |
Q |
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||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||| |||||||| |||| ||| | | |||||| ||||||||| |
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| T |
15621297 |
gaagttcgccccaagtcactggaaagtgacatgaactatgtgccattggtagttgttcttgatccagatgcatctgggccgaatgtagctgttattcccg |
15621396 |
T |
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| Q |
584 |
atcacgttgcaactgagct |
602 |
Q |
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||| |||||||||||||| |
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| T |
15621397 |
atctagttgcaactgagct |
15621415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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