View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_30 (Length: 372)
Name: NF16056_high_30
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 47390771 - 47390430
Alignment:
| Q |
15 |
tgtttcataatcagacatcgacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatcgttttgtcataaagggattctcagtaa |
114 |
Q |
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| T |
47390771 |
tgtttcataatcagacatcgacatggcctagactagtgtgacactgtttgctattgtcatattgaaattgatcgttttgtcataaagggattctcagtaa |
47390672 |
T |
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| Q |
115 |
ttaaatgcatatctaactgggagagattaatatcttatagttcactgtagcattttatggttattagttgaaaaagattacaattttgtgtattattttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390671 |
ttaaatgcatatctaactgggagagattaatatcttatagttcagtgtagcagtttatggttattagttgaaaaagattacaattttgtgtattattttt |
47390572 |
T |
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| Q |
215 |
cttctttttcgtgcttttaatgcatactggtaatttattaatgaaccatgtatgcatagcttggagacaaaaaaccgagccattatttcatacggcacat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390571 |
cttctttttcgtgcttttaatgcatactggtaatttactaatgaaccatgtatgcatagcttggagacaaaaaaccgagccattatttcatacggcacat |
47390472 |
T |
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| Q |
315 |
aattaaagtttgtgtcaagacatgggtatacggcacaatact |
356 |
Q |
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| T |
47390471 |
aattaaagtttgtgtcaagacatgggtatacggcacaatact |
47390430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 40625352 - 40625488
Alignment:
| Q |
15 |
tgtttcataatcagacatcgacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatcgttttgtcataaagggattctcagtaa |
114 |
Q |
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||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
40625352 |
tgtttcaaaatcagatatcaacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatctttttgtc-------------cagtca |
40625438 |
T |
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| Q |
115 |
ttaaatgcatatctaactgggagagattaatatcttatagttcactgtagca |
166 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
40625439 |
ttgaatgcatatctaactgg--gagattaatatcttatagttcagtgtagca |
40625488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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