View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_34 (Length: 344)
Name: NF16056_high_34
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 52465574 - 52465902
Alignment:
| Q |
1 |
acgtgtatcattcttgatagcatatacctaaacccgtctgataatagaagatattttcttttttccgaaagaatagaggacatatttctataagctatct |
100 |
Q |
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| T |
52465574 |
acgtgtatcattcttgatagcatatacctaaacccgtctgatgatagaagatattttcttttttccgaaagaatagaggacatatttctataagctatct |
52465673 |
T |
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| Q |
101 |
ttatcaagtggtaaacatatttctagaagacttatgtttgttgatgtgtgtttctggataatgatttatcagcaagtggctcgggtaaagggtgtcatag |
200 |
Q |
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| T |
52465674 |
ttatcaagtggtaaacatattcctagaagacttatgtttgttgatgtgtgtttctggacaatgatttatcagcaagtggctcgggtaaagggtgtcgtag |
52465773 |
T |
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| Q |
201 |
atcttgaggtcggtgatgaatactaacccgaca-ttttttttattttaggcatattaaccggac----nnnnnnnnnnnactaaccggacatcttgtatg |
295 |
Q |
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| T |
52465774 |
atcttgaggtcggtgatgaatactaaccggacatttttttttattttaggcatattaacc-gacattttttttttttttactaaccggacatcttgtatg |
52465872 |
T |
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| Q |
296 |
tagctattctaaacagacttgcagaataat |
325 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
52465873 |
taactattctaaacagacttgcagaataat |
52465902 |
T |
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