View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_37 (Length: 333)
Name: NF16056_high_37
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_37 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 4499915 - 4500210
Alignment:
| Q |
18 |
caaggatcctaaacgagtgtacagtagagtttatattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtca |
117 |
Q |
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| T |
4499915 |
caaggatcctaaaccggcgtacagtacagtttatattggaaagaatgcatgagcgtgcatatacgatcggttgacatggatgtttgagttgttgtcgtca |
4500014 |
T |
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| Q |
118 |
acgggtggtttgaaccgcaaatagacatttgtggtgtcatgcaaaacgagcctaaggcctattgaacagccgatgataaaaataattccgatacaatttg |
217 |
Q |
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| T |
4500015 |
acgggtggtttgaaccgcaaatagacgtttgtggtgtcatgcaaaacgagcctaaggccgattgaacagccgatgataaaaataattccgatacaatttg |
4500114 |
T |
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| Q |
218 |
aaagcgaggaacacactcatattggccttaggcatatatgagtgtcactcgctttcatattgtaaaatggctaaagcaatgtgggacacttgagaa |
313 |
Q |
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| T |
4500115 |
aaagcaaggaacacactcatattggccttagacgtatatgagtgtcactcgctttcatattgtaaaatgactaaagcaatgtgggacacttgagaa |
4500210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 13292 - 13410
Alignment:
| Q |
51 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtg |
150 |
Q |
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| T |
13292 |
tattggaaagaatgcatgagcgtgcatattcaattggttgacacgtatgtttcagatgtcgtcataaataggagatttgaaccgcaaatagatgttaatg |
13391 |
T |
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| Q |
151 |
gtgtcatgcaaaacgagcc |
169 |
Q |
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| T |
13392 |
gtgtcatacaaaacaagcc |
13410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 17794862 - 17794744
Alignment:
| Q |
51 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaaatagacatttgtg |
150 |
Q |
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| T |
17794862 |
tattgaaaagaatgcatgagcgtgcatattcaattggttgacacgtatgtttcagatgtcgtcataaataggagatttgaaccgcaaatagatgttaatg |
17794763 |
T |
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| Q |
151 |
gtgtcatgcaaaacgagcc |
169 |
Q |
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| T |
17794762 |
gtgtcatacaaaacaagcc |
17794744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 17689316 - 17689442
Alignment:
| Q |
112 |
tcgtcaacgggtggtttgaaccgcaaatagacatttgtggtgtcatgcaaaacgagcctaaggcctattgaacagccgatgataa-aaataattccgata |
210 |
Q |
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| T |
17689316 |
tcgtcaacggatggtttgaaccgcaaatatatgttggcggtgtcatgcaaaacaagcctaagatcgattggacaactgatgataagaagaaagtctaata |
17689415 |
T |
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| Q |
211 |
caatttgaaagcgaggaacacactcat |
237 |
Q |
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| T |
17689416 |
cgatttgaaagcgatgaacatactcat |
17689442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 14635966 - 14635880
Alignment:
| Q |
51 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttgaaccgcaa |
137 |
Q |
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| T |
14635966 |
tattggaaagaatggatgagcgttcacatccaatcggtagatatggatgtgtgggatgtcgtggccaacgggtggtttcaaccgcaa |
14635880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 13606496 - 13606444
Alignment:
| Q |
51 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttg |
103 |
Q |
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| T |
13606496 |
tattggaaagagtgcatgagcgttcatatccaatcggtggacatggatgtttg |
13606444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 24374091 - 24374015
Alignment:
| Q |
50 |
atattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtt |
127 |
Q |
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| T |
24374091 |
atattggtaagaatgcatgagcgttcatatccaatcggttgacatgaatg-ttgggatgtcgtggtcaacgggcggtt |
24374015 |
T |
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